| Package | Description |
|---|---|
| bunwarpj |
Provides the main and utility classes to run the ImageJ/Fiji plugin
bUnwarpJ_: consistent and elastic image registration. |
| bunwarpj.trakem2.transform |
| Modifier and Type | Method and Description |
|---|---|
BSplineModel |
MainDialog.getSource()
Get source image model.
|
BSplineModel |
MainDialog.getTarget()
Get target image model.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
MiscTools.applyRawTransformationToSource(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
double[][] transformation_x,
double[][] transformation_y)
Apply a given raw transformation to the source image.
|
static ij.process.ImageProcessor |
MiscTools.applyTransformationMT(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
int intervals,
double[][] cx,
double[][] cy)
Apply a given B-spline transformation to the source (gray-scale) image.
|
static void |
MiscTools.applyTransformationToSource(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel sourceR,
BSplineModel sourceG,
BSplineModel sourceB,
int intervals,
double[][] cx,
double[][] cy)
Deprecated.
|
static void |
MiscTools.applyTransformationToSource(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
int intervals,
double[][] cx,
double[][] cy)
Deprecated.
|
static void |
MiscTools.applyTransformationToSourceMT(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
int intervals,
double[][] cx,
double[][] cy)
Apply a given B-spline transformation to the source (gray-scale) image.
|
void |
FinalAction.setup(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode)
Pass parameter from
MainDialog to
FinalAction. |
| Constructor and Description |
|---|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog)
Create an instance of Transformation.
|
Transformation(ij.ImagePlus sourceImp,
ij.ImagePlus targetImp,
BSplineModel source,
BSplineModel target,
PointHandler sourcePh,
PointHandler targetPh,
Mask sourceMsk,
Mask targetMsk,
double[][] sourceAffineMatrix,
double[][] targetAffineMatrix,
int min_scale_deformation,
int max_scale_deformation,
int min_scale_image,
double divWeight,
double curlWeight,
double landmarkWeight,
double imageWeight,
double consistencyWeight,
double stopThreshold,
int outputLevel,
boolean showMarquardtOptim,
int accurate_mode,
String fn_tnf_1,
String fn_tnf_2,
ij.ImagePlus output_ip_1,
ij.ImagePlus output_ip_2,
MainDialog dialog,
ij.process.ImageProcessor originalSourceIP,
ij.process.ImageProcessor originalTargetIP)
Create an instance of Transformation.
|
| Modifier and Type | Method and Description |
|---|---|
void |
CubicBSplineTransform.set(int intervals,
BSplineModel swx,
BSplineModel swy,
int width,
int height)
Set cubic B-spline transform values
|
| Constructor and Description |
|---|
CubicBSplineTransform(int intervals,
BSplineModel swx,
BSplineModel swy,
int width,
int height)
Cubic B-spline transform constructor
|
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