| Package | Description |
|---|---|
| bdv.export | |
| bdv.export.n5 |
| Modifier and Type | Class and Description |
|---|---|
static class |
ExportScalePyramid.DefaultLoopbackHeuristic
Simple heuristic: use loopback image loader if saving 8 times or more on
number of pixel access with respect to the original image.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
WriteSequenceToHdf5.writeHdf5File(AbstractSequenceDescription<?,?,?> seq,
int[][] resolutions,
int[][] subdivisions,
boolean deflate,
File hdf5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 file containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
static void |
WriteSequenceToHdf5.writeHdf5File(AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
boolean deflate,
File hdf5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 file containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
static void |
WriteSequenceToHdf5.writeHdf5PartitionFile(AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
boolean deflate,
Partition partition,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 partition file containing image data for a subset of views
and timepoints in a chunked, mipmaped representation.
|
static <T extends RealType<T> & NativeType<T>,D> |
ExportScalePyramid.writeScalePyramid(RandomAccessibleInterval<T> img,
T type,
ExportMipmapInfo mipmapInfo,
ExportScalePyramid.DatasetIO<D,T> io,
ExecutorService executorService,
int numThreads,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
ProgressWriter progressWriter)
Write an image to a chunked mipmap representation.
|
static void |
WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType> img,
int timepointIdPartition,
int setupIdPartition,
ExportMipmapInfo mipmapInfo,
boolean writeMipmapInfo,
boolean deflate,
bdv.export.IHDF5Access writerQueue,
ExecutorService executorService,
int numThreads,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
ProgressWriter progressWriter)
Write a single view to a hdf5 partition file, in a chunked, mipmaped
representation.
|
static void |
WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType> img,
Partition partition,
int timepointIdPartition,
int setupIdPartition,
ExportMipmapInfo mipmapInfo,
boolean writeMipmapInfo,
boolean deflate,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Write a single view to a hdf5 partition file, in a chunked, mipmaped
representation.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
WriteSequenceToN5.writeN5File(AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
org.janelia.saalfeldlab.n5.Compression compression,
File n5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a n5 group containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
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