| Package | Description |
|---|---|
| org.bonej.wrapperPlugins |
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyseSkeletonWrapper
A wrapper plugin to bundle AnalyzeSkeleton into BoneJ2
|
class |
AnisotropyWrapper<T extends RealType<T> & NativeType<T>>
A command that analyses the degree of anisotropy in an image.
|
class |
ConnectivityWrapper<T extends RealType<T> & NativeType<T>>
A wrapper UI class for the Connectivity Ops
|
class |
ElementFractionWrapper<T extends RealType<T> & NativeType<T>>
This command estimates the size of the given sample by counting its
foreground elements, and the whole stack by counting all the elements (bone)
and the whole image stack.
|
class |
EllipsoidFactorWrapper
ImageJ plugin to describe the local geometry of a binary image in an
oblate/prolate spheroid space.
|
class |
FitEllipsoidWrapper
A command that takes point ROIs from the ROI manager, and tries to fit an
ellipsoid on them.
|
class |
FractalDimensionWrapper<T extends RealType<T> & NativeType<T>>
This command estimates the fractal dimension of a binary image with the
box-counting algorithm.
|
class |
IntertrabecularAngleWrapper
A wrapper UI class to calculate the inter-trabecular angles based on the
study by Reznikov et al (2016): (https://doi.org/10.1016/j.actbio.2016.08.040
).
|
class |
SkeletoniseWrapper
A wrapper plugin to bundle Skeletonize3D into BoneJ2
|
class |
SurfaceAreaWrapper<T extends RealType<T> & NativeType<T>>
A wrapper command to calculate mesh surface area
|
class |
SurfaceFractionWrapper<T extends RealType<T> & NativeType<T>>
First this command creates a surface mesh from both all foreground voxels
(bone) and the whole image stack.
|
class |
ThicknessWrapper
An ImageJ2 command that wraps the sc.fiji.localThickness plugin
|
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