Uses of Class
bdv.viewer.SourceAndConverter

Packages that use SourceAndConverter

Package	Description
bdv
bdv.tools.boundingbox
bdv.tools.transformation
bdv.ui
bdv.ui.sourcegrouptree
bdv.ui.sourcetable
bdv.util
bdv.viewer
bdv.viewer.render
bdv.viewer.state

Uses of SourceAndConverter in bdv

Methods in bdv that return SourceAndConverter

Modifier and Type	Method and Description
static <T,V extends net.imglib2.Volatile<T>> SourceAndConverter<T>	BigDataViewer.wrapWithTransformedSource(SourceAndConverter<T> soc) Decorate source with an extra transformation, that can be edited manually in this viewer.

Methods in bdv with parameters of type SourceAndConverter

Modifier and Type	Method and Description
static ConverterSetup	BigDataViewer.createConverterSetup(SourceAndConverter<?> soc, int setupId) Create a ConverterSetup for the given SourceAndConverter.
static <T,V extends net.imglib2.Volatile<T>> SourceAndConverter<T>	BigDataViewer.wrapWithTransformedSource(SourceAndConverter<T> soc) Decorate source with an extra transformation, that can be edited manually in this viewer.

Method parameters in bdv with type arguments of type SourceAndConverter

Modifier and Type	Method and Description
static void	BigDataViewer.initSetups(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, List<ConverterSetup> converterSetups, List<SourceAndConverter<?>> sources)
static BigDataViewer	BigDataViewer.open(ArrayList<ConverterSetup> converterSetups, ArrayList<SourceAndConverter<?>> sources, int numTimepoints, CacheControl cache, String windowTitle, ProgressWriter progressWriter, ViewerOptions options)

Constructor parameters in bdv with type arguments of type SourceAndConverter

Constructor and Description
BigDataViewer(ArrayList<ConverterSetup> converterSetups, ArrayList<SourceAndConverter<?>> sources, mpicbg.spim.data.generic.AbstractSpimData<?> spimData, int numTimepoints, CacheControl cache, String windowTitle, ProgressWriter progressWriter, ViewerOptions options) Deprecated.
BigDataViewer(List<ConverterSetup> converterSetups, List<SourceAndConverter<?>> sources, mpicbg.spim.data.generic.AbstractSpimData<?> spimData, int numTimepoints, CacheControl cache, String windowTitle, ProgressWriter progressWriter, ViewerOptions options)

Uses of SourceAndConverter in bdv.tools.boundingbox

Fields in bdv.tools.boundingbox declared as SourceAndConverter

Modifier and Type	Field and Description
protected SourceAndConverter<net.imglib2.type.numeric.integer.UnsignedShortType>	BoundingBoxDialog.boxSourceAndConverter Deprecated.

Uses of SourceAndConverter in bdv.tools.transformation

Method parameters in bdv.tools.transformation with type arguments of type SourceAndConverter

Modifier and Type	Method and Description
void	ManualTransformationEditor.transform(Collection<SourceAndConverter<?>> sourcesToTransform) Initiate a manual transformation modifying the given sourcesToTransform.

Constructor parameters in bdv.tools.transformation with type arguments of type SourceAndConverter

Constructor and Description
ManualTransformation(List<SourceAndConverter<?>> sources)

Uses of SourceAndConverter in bdv.ui

Methods in bdv.ui that return types with arguments of type SourceAndConverter

Modifier and Type	Method and Description
List<SourceAndConverter<?>>	SourcesTransferable.SourceList.getSources()

Constructor parameters in bdv.ui with type arguments of type SourceAndConverter

Constructor and Description
SourcesTransferable(Collection<SourceAndConverter<?>> sources)

Uses of SourceAndConverter in bdv.ui.sourcegrouptree

Methods in bdv.ui.sourcegrouptree that return types with arguments of type SourceAndConverter

Modifier and Type	Method and Description
List<SourceAndConverter<?>>	SourceGroupTree.getSelectedSources() Get list of sources in selected groups.

Uses of SourceAndConverter in bdv.ui.sourcetable

Methods in bdv.ui.sourcetable that return types with arguments of type SourceAndConverter

Modifier and Type	Method and Description
List<SourceAndConverter<?>>	SourceTable.getSelectedSources()

Uses of SourceAndConverter in bdv.util

Methods in bdv.util that return types with arguments of type SourceAndConverter

Modifier and Type	Method and Description
List<SourceAndConverter<T>>	BdvStackSource.getSources()
List<SourceAndConverter<T>>	ChannelSources.getSources() Get the list of sources, one for each channel.

Methods in bdv.util with parameters of type SourceAndConverter

Modifier and Type	Method and Description
static <T> BdvStackSource<T>	BdvFunctions.show(SourceAndConverter<T> source)
static <T> BdvStackSource<T>	BdvFunctions.show(SourceAndConverter<T> source, BdvOptions options)
static <T> BdvStackSource<T>	BdvFunctions.show(SourceAndConverter<T> source, int numTimePoints)
static <T> BdvStackSource<T>	BdvFunctions.show(SourceAndConverter<T> soc, int numTimepoints, BdvOptions options)

Method parameters in bdv.util with type arguments of type SourceAndConverter

Modifier and Type	Method and Description
static <T> BdvStackSource<T>	BdvFunctions.show(List<SourceAndConverter<T>> sources, int numTimepoints, BdvOptions options)

Constructors in bdv.util with parameters of type SourceAndConverter

Constructor and Description
BdvOverlaySource(BdvHandle bdv, int numTimepoints, PlaceHolderConverterSetup setup, SourceAndConverter<Void> source, PlaceHolderOverlayInfo info, O overlay)
BdvPointsSource(BdvHandle bdv, int numTimepoints, PlaceHolderConverterSetup setup, SourceAndConverter<Void> source, PlaceHolderOverlayInfo info, PointsOverlay overlay)
BdvVirtualChannelSource(BdvHandle bdv, int numTimepoints, PlaceHolderConverterSetup setup, SourceAndConverter<net.imglib2.type.numeric.ARGBType> source, PlaceHolderOverlayInfo info, bdv.util.VirtualChannels.ChannelSourceCoordinator coordinator)
PlaceHolderOverlayInfo(ViewerPanel viewer, SourceAndConverter<?> source, ConverterSetup converterSetup)

Constructor parameters in bdv.util with type arguments of type SourceAndConverter

Constructor and Description
BdvStackSource(BdvHandle bdv, int numTimepoints, T type, List<ConverterSetup> converterSetups, List<SourceAndConverter<T>> sources)

Uses of SourceAndConverter in bdv.viewer

Fields in bdv.viewer declared as SourceAndConverter

Modifier and Type	Field and Description
protected SourceAndConverter<? extends net.imglib2.Volatile<T>>	SourceAndConverter.volatileSourceAndConverter

Methods in bdv.viewer that return SourceAndConverter

Modifier and Type	Method and Description
SourceAndConverter<? extends net.imglib2.Volatile<T>>	SourceAndConverter.asVolatile()
SourceAndConverter<?>	SynchronizedViewerState.getCurrentSource() Get the current source.
SourceAndConverter<?>	ViewerState.getCurrentSource() Get the current source.
SourceAndConverter<?>	BasicViewerState.getCurrentSource() Get the current source.
SourceAndConverter<?>	ConverterSetups.getSource(ConverterSetup setup)
SourceAndConverter<?>	SourceToConverterSetupBimap.getSource(ConverterSetup converterSetup)

Methods in bdv.viewer that return types with arguments of type SourceAndConverter

Modifier and Type	Method and Description
Set<SourceAndConverter<?>>	SynchronizedViewerState.getActiveSources() Get the set of active sources.
Set<SourceAndConverter<?>>	ViewerState.getActiveSources() Get the set of active sources.
Set<SourceAndConverter<?>>	BasicViewerState.getActiveSources() Get the set of active sources.
List<SourceAndConverter<?>>	SynchronizedViewerState.getSources() Get the list of sources.
List<SourceAndConverter<?>>	ViewerState.getSources() Get the list of sources.
List<SourceAndConverter<?>>	BasicViewerState.getSources() Get the list of sources.
Set<SourceAndConverter<?>>	SynchronizedViewerState.getSourcesInGroup(SourceGroup group) Get the set sources in group.
Set<SourceAndConverter<?>>	ViewerState.getSourcesInGroup(SourceGroup group) Get the set sources in group.
Set<SourceAndConverter<?>>	BasicViewerState.getSourcesInGroup(SourceGroup group) Get the set sources in group.
Set<SourceAndConverter<?>>	SynchronizedViewerState.getVisibleAndPresentSources() Get the set of visible sources that also provide image data for the current timepoint.
Set<SourceAndConverter<?>>	ViewerState.getVisibleAndPresentSources() Get the set of visible sources that also provide image data for the current timepoint.
Set<SourceAndConverter<?>>	BasicViewerState.getVisibleAndPresentSources() Get the set of visible sources that also provide image data for the current timepoint.
Set<SourceAndConverter<?>>	SynchronizedViewerState.getVisibleSources() Get the set of visible sources.
Set<SourceAndConverter<?>>	ViewerState.getVisibleSources() Get the set of visible sources.
Set<SourceAndConverter<?>>	BasicViewerState.getVisibleSources() Get the set of visible sources.
Comparator<SourceAndConverter<?>>	SynchronizedViewerState.sourceOrder() Returns a Comparator that compares sources according to the order in which they occur in the sources list.
Comparator<SourceAndConverter<?>>	ViewerState.sourceOrder() Returns a Comparator that compares sources according to the order in which they occur in the sources list.
Comparator<SourceAndConverter<?>>	BasicViewerState.sourceOrder() Returns a Comparator that compares sources according to the order in which they occur in the sources list.

Methods in bdv.viewer with parameters of type SourceAndConverter

Modifier and Type	Method and Description
boolean	SynchronizedViewerState.addSource(SourceAndConverter<?> source) Add source to the state.
boolean	ViewerState.addSource(SourceAndConverter<?> source) Add source to the state (optional operation).
void	ViewerPanel.addSource(SourceAndConverter<?> sourceAndConverter) Deprecated. Modify ViewerPanel.state() directly
boolean	BasicViewerState.addSource(SourceAndConverter<?> source) Add source to the state.
boolean	SynchronizedViewerState.addSourceToGroup(SourceAndConverter<?> source, SourceGroup group) Add source to group.
boolean	ViewerState.addSourceToGroup(SourceAndConverter<?> source, SourceGroup group) Add source to group (optional operation).
boolean	BasicViewerState.addSourceToGroup(SourceAndConverter<?> source, SourceGroup group) Add source to group.
boolean	SynchronizedViewerState.containsSource(SourceAndConverter<?> source) Check whether the state contains the source.
boolean	ViewerState.containsSource(SourceAndConverter<?> source) Check whether the state contains the source.
boolean	BasicViewerState.containsSource(SourceAndConverter<?> source) Check whether the state contains the source.
ConverterSetup	ConverterSetups.getConverterSetup(SourceAndConverter<?> source)
ConverterSetup	SourceToConverterSetupBimap.getConverterSetup(SourceAndConverter<?> source)
boolean	SynchronizedViewerState.isCurrentSource(SourceAndConverter<?> source) Returns true if source is the current source.
boolean	ViewerState.isCurrentSource(SourceAndConverter<?> source) Returns true if source is the current source.
boolean	BasicViewerState.isCurrentSource(SourceAndConverter<?> source) Returns true if source is the current source.
boolean	SynchronizedViewerState.isSourceActive(SourceAndConverter<?> source) Check whether the given source is active.
boolean	ViewerState.isSourceActive(SourceAndConverter<?> source) Check whether the given source is active.
boolean	BasicViewerState.isSourceActive(SourceAndConverter<?> source) Check whether the given source is active.
boolean	SynchronizedViewerState.isSourceVisible(SourceAndConverter<?> source) Check whether the given source is visible.
boolean	ViewerState.isSourceVisible(SourceAndConverter<?> source) Check whether the given source is visible.
boolean	BasicViewerState.isSourceVisible(SourceAndConverter<?> source) Check whether the given source is visible.
boolean	SynchronizedViewerState.isSourceVisibleAndPresent(SourceAndConverter<?> source) Check whether the given source is both visible and provides image data for the current timepoint.
boolean	ViewerState.isSourceVisibleAndPresent(SourceAndConverter<?> source) Check whether the given source is both visible and provides image data for the current timepoint.
boolean	BasicViewerState.isSourceVisibleAndPresent(SourceAndConverter<?> source) Check whether the given source is both visible and provides image data for the current timepoint.
void	ConverterSetups.put(SourceAndConverter<?> source, ConverterSetup setup)
boolean	SynchronizedViewerState.removeSource(SourceAndConverter<?> source) Remove source from the state.
boolean	ViewerState.removeSource(SourceAndConverter<?> source) Remove source from the state (optional operation).
boolean	BasicViewerState.removeSource(SourceAndConverter<?> source) Remove source from the state.
boolean	SynchronizedViewerState.removeSourceFromGroup(SourceAndConverter<?> source, SourceGroup group) Remove source from group.
boolean	ViewerState.removeSourceFromGroup(SourceAndConverter<?> source, SourceGroup group) Remove source from group (optional operation).
boolean	BasicViewerState.removeSourceFromGroup(SourceAndConverter<?> source, SourceGroup group) Remove source from group.
boolean	SynchronizedViewerState.setCurrentSource(SourceAndConverter<?> source) Make source the current source.
boolean	ViewerState.setCurrentSource(SourceAndConverter<?> source) Make source the current source (optional operation).
boolean	BasicViewerState.setCurrentSource(SourceAndConverter<?> source) Make source the current source.
boolean	SynchronizedViewerState.setSourceActive(SourceAndConverter<?> source, boolean active) Set source active or inactive.
boolean	ViewerState.setSourceActive(SourceAndConverter<?> source, boolean active) Set source active or inactive (optional operation).
boolean	BasicViewerState.setSourceActive(SourceAndConverter<?> source, boolean active) Set source active or inactive.

Method parameters in bdv.viewer with type arguments of type SourceAndConverter

Modifier and Type	Method and Description
boolean	SynchronizedViewerState.addSources(Collection<? extends SourceAndConverter<?>> collection) Add all sources in collection to the state.
boolean	ViewerState.addSources(Collection<? extends SourceAndConverter<?>> collection) Add all sources in collection to the state (optional operation).
boolean	BasicViewerState.addSources(Collection<? extends SourceAndConverter<?>> collection) Add all sources in collection to the state.
void	ViewerPanel.addSources(Collection<SourceAndConverter<?>> sourceAndConverter) Deprecated. Modify ViewerPanel.state() directly
boolean	SynchronizedViewerState.addSourcesToGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Add all sources in collection to group.
boolean	ViewerState.addSourcesToGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Add all sources in collection to group (optional operation).
boolean	BasicViewerState.addSourcesToGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Add all sources in collection to group.
default List<ConverterSetup>	SourceToConverterSetupBimap.getConverterSetups(List<? extends SourceAndConverter<?>> sources) Returns list of all non-null ConverterSetups associated to sources.
boolean	SynchronizedViewerState.removeSources(Collection<? extends SourceAndConverter<?>> collection) Remove all sources in collection from the state.
boolean	ViewerState.removeSources(Collection<? extends SourceAndConverter<?>> collection) Remove all sources in collection from the state (optional operation).
boolean	BasicViewerState.removeSources(Collection<? extends SourceAndConverter<?>> collection) Remove all sources in collection from the state.
boolean	SynchronizedViewerState.removeSourcesFromGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Remove all sources in collection from group.
boolean	ViewerState.removeSourcesFromGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Remove all sources in collection from group (optional operation).
boolean	BasicViewerState.removeSourcesFromGroup(Collection<? extends SourceAndConverter<?>> collection, SourceGroup group) Remove all sources in collection from group.
boolean	SynchronizedViewerState.setSourcesActive(Collection<? extends SourceAndConverter<?>> collection, boolean active) Set all sources in collection active or inactive.
boolean	ViewerState.setSourcesActive(Collection<? extends SourceAndConverter<?>> collection, boolean active) Set all sources in collection active or inactive (optional operation).
boolean	BasicViewerState.setSourcesActive(Collection<? extends SourceAndConverter<?>> collection, boolean active) Set all sources in collection active or inactive.

Constructors in bdv.viewer with parameters of type SourceAndConverter

Constructor and Description
SourceAndConverter(Source<T> spimSource, net.imglib2.converter.Converter<T,net.imglib2.type.numeric.ARGBType> converter, SourceAndConverter<? extends net.imglib2.Volatile<T>> volatileSourceAndConverter)
SourceAndConverter(SourceAndConverter<T> soc) copy constructor

Constructor parameters in bdv.viewer with type arguments of type SourceAndConverter

Constructor and Description
ViewerFrame(List<SourceAndConverter<?>> sources, int numTimepoints, CacheControl cache)
ViewerFrame(List<SourceAndConverter<?>> sources, int numTimepoints, CacheControl cacheControl, KeymapManager keymapManager, AppearanceManager appearanceManager, ViewerOptions optional)
ViewerPanel(List<SourceAndConverter<?>> sources, int numTimePoints, CacheControl cacheControl)
ViewerPanel(List<SourceAndConverter<?>> sources, int numTimepoints, CacheControl cacheControl, ViewerOptions optional)

Uses of SourceAndConverter in bdv.viewer.render

Method parameters in bdv.viewer.render with type arguments of type SourceAndConverter

Modifier and Type	Method and Description
default VolatileProjector	AccumulateProjectorFactory.createProjector(List<VolatileProjector> sourceProjectors, List<SourceAndConverter<?>> sources, List<? extends net.imglib2.RandomAccessible<? extends A>> sourceScreenImages, net.imglib2.RandomAccessibleInterval<A> targetScreenImage, int numThreads, ExecutorService executorService)
VolatileProjector	AlphaWeightedAccumulateProjectorARGB.Factory.createProjector(List<VolatileProjector> sourceProjectors, List<SourceAndConverter<?>> sources, List<? extends net.imglib2.RandomAccessible<? extends net.imglib2.type.numeric.ARGBType>> sourceScreenImages, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.ARGBType> targetScreenImage, int numThreads, ExecutorService executorService)
VolatileProjector	AccumulateProjectorARGB.Factory.createProjector(List<VolatileProjector> sourceProjectors, List<SourceAndConverter<?>> sources, List<? extends net.imglib2.RandomAccessible<? extends net.imglib2.type.numeric.ARGBType>> sourceScreenImages, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.ARGBType> targetScreenImage, int numThreads, ExecutorService executorService)

Uses of SourceAndConverter in bdv.viewer.state

Subclasses of SourceAndConverter in bdv.viewer.state

Modifier and Type	Class and Description
class	SourceState<T> Deprecated.

Methods in bdv.viewer.state that return SourceAndConverter

Modifier and Type	Method and Description
SourceAndConverter<?>	SourceState.getHandle() Deprecated. Get the SourceAndConverter that this SourceState represents.

Methods in bdv.viewer.state with parameters of type SourceAndConverter

Modifier and Type	Method and Description
void	ViewerState.addSource(SourceAndConverter<?> source) Deprecated.
static <T> SourceState<T>	SourceState.create(SourceAndConverter<T> soc, ViewerState owner) Deprecated. Create a SourceState from a SourceAndConverter.

Constructors in bdv.viewer.state with parameters of type SourceAndConverter

Constructor and Description
SourceState(SourceAndConverter<T> soc, ViewerState owner) Deprecated.
SourceState(SourceAndConverter<T> soc, ViewerState owner, SourceAndConverter<?> handle) Deprecated.
SourceState(SourceAndConverter<T> soc, ViewerState owner, SourceAndConverter<?> handle) Deprecated.

Constructor parameters in bdv.viewer.state with type arguments of type SourceAndConverter

Constructor and Description
ViewerState(List<SourceAndConverter<?>> sources, int numTimePoints) Deprecated.
ViewerState(List<SourceAndConverter<?>> sources, List<SourceGroup> sourceGroups, int numTimePoints) Deprecated.