Uses of Interface
fiji.plugin.trackmate.TrackMateModule

Packages that use TrackMateModule

Package	Description
fiji.plugin.trackmate.action
fiji.plugin.trackmate.action.autonaming
fiji.plugin.trackmate.action.closegaps
fiji.plugin.trackmate.action.fit
fiji.plugin.trackmate.detection
fiji.plugin.trackmate.features
fiji.plugin.trackmate.features.edges	Package for the classes that compute scalar features on links between spots (edges), such as instantaneous velocities, etc....
fiji.plugin.trackmate.features.manual
fiji.plugin.trackmate.features.spot
fiji.plugin.trackmate.features.track
fiji.plugin.trackmate.gui.components
fiji.plugin.trackmate.providers
fiji.plugin.trackmate.tracking
fiji.plugin.trackmate.tracking.jaqaman	Classes that implements the tracking logic of the framework described first in:
fiji.plugin.trackmate.tracking.kalman
fiji.plugin.trackmate.tracking.kdtree
fiji.plugin.trackmate.tracking.manual	Classes implementing the manual tracker.
fiji.plugin.trackmate.tracking.overlap
fiji.plugin.trackmate.visualization
fiji.plugin.trackmate.visualization.hyperstack
fiji.plugin.trackmate.visualization.trackscheme

Uses of TrackMateModule in fiji.plugin.trackmate.action

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.action

Modifier and Type	Interface and Description
interface	TrackMateActionFactory

Classes in fiji.plugin.trackmate.action that implement TrackMateModule

Modifier and Type	Class and Description
static class	CaptureOverlayAction.Factory
static class	ComputeDistanceToRoiAction.DistanceToRoiFeature<T extends RealType<T> & NativeType<T>>
static class	ComputeDistanceToRoiAction.Factory
static class	CTCExporterAction.Factory
static class	ExportAllSpotsStatsAction.Factory
static class	ExportStatsTablesAction.Factory
static class	ExportTracksToXML.Factory
static class	ExtractTrackStackAction.ExtractTrackStackActionFactory
static class	IcyTrackExporter.Factory
static class	IJRoiExporter.IJRoiExporterActionFactory
static class	ISBIChallengeExporter.Factory
static class	LabelImgExporter.Factory
static class	MergeFileAction.Factory
static class	MotilityLabExporter.Factory
static class	PlotNSpotsVsTimeAction.Factory
static class	RecomputeFeatureAction.Factory
static class	ResetSpotTimeFeatureAction.Factory
static class	TrackBranchAnalysis.Factory
static class	TrimNotVisibleAction.Factory

Uses of TrackMateModule in fiji.plugin.trackmate.action.autonaming

Classes in fiji.plugin.trackmate.action.autonaming that implement TrackMateModule

Modifier and Type	Class and Description
static class	AutoNamingAction.Factory

Uses of TrackMateModule in fiji.plugin.trackmate.action.closegaps

Classes in fiji.plugin.trackmate.action.closegaps that implement TrackMateModule

Modifier and Type	Class and Description
static class	CloseGapsAction.Factory

Uses of TrackMateModule in fiji.plugin.trackmate.action.fit

Classes in fiji.plugin.trackmate.action.fit that implement TrackMateModule

Modifier and Type	Class and Description
static class	SpotGaussianFittingAction.Factory

Uses of TrackMateModule in fiji.plugin.trackmate.detection

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.detection

Modifier and Type	Interface and Description
interface	SpotDetectorFactory<T extends RealType<T> & NativeType<T>> For detectors that process one time-point at a time, independently, and for which we can therefore propose multithreading.
interface	SpotDetectorFactoryBase<T extends RealType<T> & NativeType<T>> Mother interface for detector factories.
interface	SpotGlobalDetectorFactory<T extends RealType<T> & NativeType<T>> Interface for detector factories that need to process all the time-points at once.

Classes in fiji.plugin.trackmate.detection that implement TrackMateModule

Modifier and Type	Class and Description
class	DogDetectorFactory<T extends RealType<T> & NativeType<T>>
class	HessianDetectorFactory<T extends RealType<T> & NativeType<T>>
class	LabelImageDetectorFactory<T extends RealType<T> & NativeType<T>>
class	LogDetectorFactory<T extends RealType<T> & NativeType<T>>
class	ManualDetectorFactory<T extends RealType<T> & NativeType<T>>
class	MaskDetectorFactory<T extends RealType<T> & NativeType<T>>
class	ThresholdDetectorFactory<T extends RealType<T> & NativeType<T>>

Uses of TrackMateModule in fiji.plugin.trackmate.features

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.features

Modifier and Type	Interface and Description
interface	FeatureAnalyzer

Uses of TrackMateModule in fiji.plugin.trackmate.features.edges

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.features.edges

Modifier and Type	Interface and Description
interface	EdgeAnalyzer Interface for analyzers that can compute scalar numerical features for an edge of a TrackMate model.

Classes in fiji.plugin.trackmate.features.edges that implement TrackMateModule

Modifier and Type	Class and Description
class	AbstractEdgeAnalyzer Abstract class for edge analyzers that are local and not manual.
class	DirectionalChangeAnalyzer
class	EdgeSpeedAnalyzer
class	EdgeTargetAnalyzer
class	EdgeTimeLocationAnalyzer

Uses of TrackMateModule in fiji.plugin.trackmate.features.manual

Classes in fiji.plugin.trackmate.features.manual that implement TrackMateModule

Modifier and Type	Class and Description
class	ManualEdgeColorAnalyzer
class	ManualSpotColorAnalyzerFactory<T extends RealType<T> & NativeType<T>>

Uses of TrackMateModule in fiji.plugin.trackmate.features.spot

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.features.spot

Modifier and Type	Interface and Description
interface	SpotAnalyzerFactory<T extends RealType<T> & NativeType<T>> Interface for factories that can generate a SpotAnalyzer configured to operate on a specific frame of a model.
interface	SpotAnalyzerFactoryBase<T extends RealType<T> & NativeType<T>> Top-level interface for spot analyzer factories, both classical and morphological.
interface	SpotMorphologyAnalyzerFactory<T extends RealType<T> & NativeType<T>> Special interface for spot analyzers that can compute feature values based on the contour of spots.

Classes in fiji.plugin.trackmate.features.spot that implement TrackMateModule

Modifier and Type	Class and Description
class	SpotContrastAndSNRAnalyzerFactory<T extends RealType<T> & NativeType<T>> A factory for SpotContrastAndSNRAnalyzers.
class	SpotFitEllipseAnalyzerFactory<T extends RealType<T> & NativeType<T>>
class	SpotIntensityMultiCAnalyzerFactory<T extends RealType<T> & NativeType<T>>
class	SpotShapeAnalyzerFactory<T extends RealType<T> & NativeType<T>>

Uses of TrackMateModule in fiji.plugin.trackmate.features.track

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.features.track

Modifier and Type	Interface and Description
interface	TrackAnalyzer Mother interface for the classes that can compute the feature of tracks.

Classes in fiji.plugin.trackmate.features.track that implement TrackMateModule

Modifier and Type	Class and Description
class	AbstractTrackAnalyzer Abstract class for track analyzers that are local and not manual.
class	TrackBranchingAnalyzer
class	TrackDurationAnalyzer
class	TrackIndexAnalyzer
class	TrackLocationAnalyzer
class	TrackMotilityAnalyzer
class	TrackSpeedStatisticsAnalyzer
class	TrackSpotQualityFeatureAnalyzer

Uses of TrackMateModule in fiji.plugin.trackmate.gui.components

Classes in fiji.plugin.trackmate.gui.components with type parameters of type TrackMateModule

Modifier and Type	Class and Description
class	ModuleChooserPanel<K extends TrackMateModule>

Uses of TrackMateModule in fiji.plugin.trackmate.providers

Classes in fiji.plugin.trackmate.providers with type parameters of type TrackMateModule

Modifier and Type	Class and Description
class	AbstractProvider<K extends TrackMateModule>

Uses of TrackMateModule in fiji.plugin.trackmate.tracking

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.tracking

Modifier and Type	Interface and Description
interface	SpotImageTrackerFactory A specialization of SpotTrackerFactory for trackers that require the source image as input.
interface	SpotTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.tracking.jaqaman

Classes in fiji.plugin.trackmate.tracking.jaqaman that implement TrackMateModule

Modifier and Type	Class and Description
class	SegmentTrackerFactory Base class for trackers with split/merge actions.
class	SimpleSparseLAPTrackerFactory
class	SparseLAPTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.tracking.kalman

Classes in fiji.plugin.trackmate.tracking.kalman that implement TrackMateModule

Modifier and Type	Class and Description
class	AdvancedKalmanTrackerFactory Kalman tracker factory with features cost addition and segment splitting / merging.
class	KalmanTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.tracking.kdtree

Classes in fiji.plugin.trackmate.tracking.kdtree that implement TrackMateModule

Modifier and Type	Class and Description
class	NearestNeighborTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.tracking.manual

Classes in fiji.plugin.trackmate.tracking.manual that implement TrackMateModule

Modifier and Type	Class and Description
class	ManualTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.tracking.overlap

Classes in fiji.plugin.trackmate.tracking.overlap that implement TrackMateModule

Modifier and Type	Class and Description
class	OverlapTrackerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.visualization

Subinterfaces of TrackMateModule in fiji.plugin.trackmate.visualization

Modifier and Type	Interface and Description
interface	ViewFactory

Uses of TrackMateModule in fiji.plugin.trackmate.visualization.hyperstack

Classes in fiji.plugin.trackmate.visualization.hyperstack that implement TrackMateModule

Modifier and Type	Class and Description
class	HyperStackDisplayerFactory

Uses of TrackMateModule in fiji.plugin.trackmate.visualization.trackscheme

Classes in fiji.plugin.trackmate.visualization.trackscheme that implement TrackMateModule

Modifier and Type	Class and Description
class	TrackSchemeFactory