Module org.bonej.bonej_plugins
Package org.bonej.wrapperPlugins
package org.bonej.wrapperPlugins
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ClassesClassDescriptionA wrapper plugin to bundle AnalyzeSkeleton into BoneJ2A command that analyses the degree of anisotropy in an image.Abstract base class for BoneJ command plugins.A main class for quickly testing the wrapper pluginsCommon messages displayed for the userElementFractionWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>This command estimates the size of the given sample by counting its foreground elements, and the whole stack by counting all the elements (bone) and the whole image stack.EllipsoidFactorWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>ImageJ plugin to describe the local geometry of a binary image in an oblate/prolate spheroid space.A command that takes point ROIs from the ROI manager, and tries to fit an ellipsoid on them.FractalDimensionWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>This command estimates the fractal dimension of a binary image with the box-counting algorithm.A wrapper UI class to calculate the inter-trabecular angles based on the study by Reznikov et al (2016): (https://doi.org/10.1016/j.actbio.2016.08.040 ).A wrapper plugin to bundle Skeletonize3D into BoneJ2A wrapper command to calculate mesh surface areaSurfaceFractionWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>First this command creates a surface mesh from both all foreground voxels (bone) and the whole image stack.Test command to load raw data using DatasetUtil and display it.Test command to save the current active Dataset as a raw file using DatasetUtil.An ImageJ2 command that wraps the sc.fiji.localThickness plugin