Module org.bonej.bonej_plugins
Package org.bonej.wrapperPlugins

Class EllipsoidFactorWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>

java.lang.Object
org.scijava.AbstractContextual
org.scijava.command.ContextCommand
org.bonej.wrapperPlugins.BoneJCommand
org.bonej.wrapperPlugins.EllipsoidFactorWrapper<T>
All Implemented Interfaces:
Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.plugin.SciJavaPlugin
public class EllipsoidFactorWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> extends BoneJCommand
ImageJ plugin to describe the local geometry of a binary image in an oblate/prolate spheroid space. Uses Skeletonize3D to generate a 3D skeleton and/or a distance ridge-based image to generate seed points, which are used as centres for maximally inscribed ellipsoids. The ellipsoid factor (EF) is a method for the local determination of the rod- or plate-like nature of porous or spongy continua. EF at a point within a 3D structure is defined as the difference in axis ratios of the greatest ellipsoid that fits inside the structure and that contains the point of interest, and ranges from −1 for strongly oblate (discus-shaped) ellipsoids, to +1 for strongly prolate (javelin-shaped) ellipsoids. For an ellipsoid with axes a ≤ b ≤ c, EF = a/b − b/c.
Author:
Michael Doube, Alessandro Felder
See Also:

  • Constructor Details

    • EllipsoidFactorWrapper

      public EllipsoidFactorWrapper()

  • Method Details

    • run

      public void run()