Module org.bonej.bonej_plugins

Package org.bonej.wrapperPlugins

Class BoneJCommand

java.lang.Object

org.scijava.AbstractContextual

org.scijava.command.ContextCommand

org.bonej.wrapperPlugins.BoneJCommand

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.plugin.SciJavaPlugin

Direct Known Subclasses:

AnalyseSkeletonWrapper, AnisotropyWrapper, ElementFractionWrapper, EllipsoidFactorWrapper, FitEllipsoidWrapper, FractalDimensionWrapper, IntertrabecularAngleWrapper, SkeletoniseWrapper, SurfaceAreaWrapper, SurfaceFractionWrapper, ThicknessWrapper

public abstract class BoneJCommand
extends org.scijava.command.ContextCommand

Abstract base class for BoneJ command plugins. Provides common functionality and fields shared across all BoneJ commands.

Field Summary

Fields

Modifier and Type	Field	Description
protected org.scijava.table.Table<org.scijava.table.DefaultColumn<Double>,Double>	resultsTable	The results of the command in a Table.
protected List<HyperstackUtils.Subspace<net.imglib2.type.logic.BitType>>	subspaces

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	BoneJCommand()	Default constructor for BoneJ command plugin instantiation by SciJava framework.

Method Summary

Modifier and Type	Method	Description
protected <C extends net.imglib2.type.numeric.ComplexType<C>> List<HyperstackUtils.Subspace<net.imglib2.type.logic.BitType>>	find3DSubspaces(net.imagej.ImgPlus<C> image)

Methods inherited from class org.scijava.command.ContextCommand

cancel, getCancelReason, isCanceled

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

setContext

Methods inherited from interface java.lang.Runnable

run

Field Details

subspaces

protected List<HyperstackUtils.Subspace<net.imglib2.type.logic.BitType>> subspaces

resultsTable

protected org.scijava.table.Table<org.scijava.table.DefaultColumn<Double>,Double> resultsTable

The results of the command in a Table.

Null if there are no results.

Constructor Details

BoneJCommand

protected BoneJCommand()

Default constructor for BoneJ command plugin instantiation by SciJava framework.

Method Details

find3DSubspaces

protected <C extends net.imglib2.type.numeric.ComplexType<C>>
List<HyperstackUtils.Subspace<net.imglib2.type.logic.BitType>> find3DSubspaces(net.imagej.ImgPlus<C> image)