Module org.bonej.bonej_plugins

Package org.bonej.wrapperPlugins

Class SurfaceFractionWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>

java.lang.Object

org.scijava.AbstractContextual

org.scijava.command.ContextCommand

org.bonej.wrapperPlugins.BoneJCommand

org.bonej.wrapperPlugins.SurfaceFractionWrapper<T>

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.plugin.SciJavaPlugin

public class SurfaceFractionWrapper<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
extends BoneJCommand

First this command creates a surface mesh from both all foreground voxels (bone) and the whole image stack. Then it calculates the surfaces' volumes, their ratio, and shows the results. Results are shown in calibrated units, if possible.

Author:

Richard Domander

Field Summary

Fields inherited from class org.bonej.wrapperPlugins.BoneJCommand

resultsTable, subspaces

Constructor Summary

Constructors

Constructor	Description
SurfaceFractionWrapper()

Method Summary

Modifier and Type	Method	Description
void	run()

Methods inherited from class org.bonej.wrapperPlugins.BoneJCommand

find3DSubspaces

Methods inherited from class org.scijava.command.ContextCommand

cancel, getCancelReason, isCanceled

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

setContext

Constructor Details

SurfaceFractionWrapper

public SurfaceFractionWrapper()

Method Details

run

public void run()