All Classes and Interfaces
Classes
Class
Description
A wrapper plugin to bundle AnalyzeSkeleton into BoneJ2
A command that analyses the degree of anisotropy in an image.
Abstract base class for BoneJ command plugins.
A main class for quickly testing the wrapper plugins
Miscellaneous utility methods.
Common messages displayed for the user
This command estimates the size of the given sample by counting its
foreground elements, and the whole stack by counting all the elements (bone)
and the whole image stack.
ImageJ plugin to describe the local geometry of a binary image in an
oblate/prolate spheroid space.
A command that takes point ROIs from the ROI manager, and tries to fit an
ellipsoid on them.
This command estimates the fractal dimension of a binary image with the
box-counting algorithm.
A static class containing utilities for splitting an n-dimensional hyperstack
into arbitrary subspaces
A class which stores a subspace interval of an n-dimensional hyperspace,
and metadata
Describes the metadata of the subspace in relation to one of the axes in
the hyperspace
A wrapper UI class to calculate the inter-trabecular angles based on the
study by Reznikov et al (2016): (https://doi.org/10.1016/j.actbio.2016.08.040
).
Static utility methods that help display results to the user
A command that allows the user to clear the
SharedTableA wrapper plugin to bundle Skeletonize3D into BoneJ2
A wrapper command to calculate mesh surface area
First this command creates a surface mesh from both all foreground voxels
(bone) and the whole image stack.
Test command to load raw data using DatasetUtil and display it.
Test command to save the current active Dataset as a raw file using DatasetUtil.
An ImageJ2 command that wraps the sc.fiji.localThickness plugin