Uses of Class
net.preibisch.mvrecon.fiji.spimdata.interestpoints.ViewInterestPoints

Packages that use ViewInterestPoints

Package	Description
net.preibisch.mvrecon.fiji.spimdata
net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint
net.preibisch.mvrecon.fiji.spimdata.interestpoints
net.preibisch.mvrecon.process.fusion.blk
net.preibisch.mvrecon.process.interestpointdetection

Uses of ViewInterestPoints in net.preibisch.mvrecon.fiji.spimdata

Methods in net.preibisch.mvrecon.fiji.spimdata that return ViewInterestPoints

Modifier and Type	Method	Description
ViewInterestPoints	SpimData2.getViewInterestPoints()

Methods in net.preibisch.mvrecon.fiji.spimdata with parameters of type ViewInterestPoints

Modifier and Type	Method	Description
protected void	SpimData2.setViewsInterestPoints(ViewInterestPoints viewsInterestPoints)

Constructors in net.preibisch.mvrecon.fiji.spimdata with parameters of type ViewInterestPoints

Modifier	Constructor	Description
	SpimData2(URI basePathUri, mpicbg.spim.data.sequence.SequenceDescription sequenceDescription, mpicbg.spim.data.registration.ViewRegistrations viewRegistrations, ViewInterestPoints viewsInterestPoints, BoundingBoxes boundingBoxes, PointSpreadFunctions pointSpreadFunctions, StitchingResults stitchingResults, IntensityAdjustments intensityAdjustments)

Uses of ViewInterestPoints in net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint

Methods in net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint that return ViewInterestPoints

Modifier and Type	Method	Description
protected ViewInterestPoints	InterestPointTableModel.getViewInterestPoints()

Methods in net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint with parameters of type ViewInterestPoints

Modifier and Type	Method	Description
protected String	InterestPointTableModel.getParameters(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
void	InterestPointExplorerPanel.initComponent(ViewInterestPoints viewInterestPoints)
protected int	InterestPointTableModel.numConsensusSetsBetweenVisible(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
protected int	InterestPointTableModel.numCorrespondences(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
protected int	InterestPointTableModel.numCorresponding(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
protected int	InterestPointTableModel.numCorrespondingBetweenVisible(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
protected int	InterestPointTableModel.numDetections(ViewInterestPoints vip, List<? extends mpicbg.spim.data.sequence.ViewId> views, String label)
protected void	InterestPointTableModel.update(ViewInterestPoints viewInterestPoints)

Constructors in net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint with parameters of type ViewInterestPoints

Modifier	Constructor	Description
	InterestPointExplorerPanel(ViewInterestPoints viewInterestPoints, FilteredAndGroupedExplorer<?> viewSetupExplorer)
	InterestPointTableModel(ViewInterestPoints viewInterestPoints, InterestPointExplorerPanel panel)

Uses of ViewInterestPoints in net.preibisch.mvrecon.fiji.spimdata.interestpoints

Methods in net.preibisch.mvrecon.fiji.spimdata.interestpoints that return ViewInterestPoints

Modifier and Type	Method	Description
ViewInterestPoints	XmlIoViewInterestPoints.fromXml(org.jdom2.Element allInterestPointLists, URI basePath, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.sequence.ViewDescription> viewDescriptions)

Methods in net.preibisch.mvrecon.fiji.spimdata.interestpoints with parameters of type ViewInterestPoints

Modifier and Type	Method	Description
static int	CorrespondenceTools.removeCorrespondencesForViewLabel(ViewInterestPoints vip, mpicbg.spim.data.sequence.ViewId viewId, String label, int numThreads)	Removes correspondences pointing to a specific view+label from all other views.
static int	CorrespondenceTools.removeCorrespondencesNotToViews(ViewInterestPoints vip, Set<mpicbg.spim.data.sequence.ViewId> viewsToKeep, int numThreads)	Inverse of CorrespondenceTools.removeCorrespondencesToViews(net.preibisch.mvrecon.fiji.spimdata.interestpoints.ViewInterestPoints, java.util.Set<mpicbg.spim.data.sequence.ViewId>, int): removes correspondences whose correspondingViewId is NOT in the given set of views to keep.
static int	CorrespondenceTools.removeCorrespondencesToLabel(ViewInterestPoints vip, String label, int numThreads)	Removes correspondences whose correspondingLabel equals the given label, from every view's every (other) interest-point list.
static int	CorrespondenceTools.removeCorrespondencesToViews(ViewInterestPoints vip, Set<mpicbg.spim.data.sequence.ViewId> viewsToRemove, int numThreads)	Removes all correspondences pointing TO the specified views from ALL other views.
org.jdom2.Element	XmlIoViewInterestPoints.toXml(ViewInterestPoints viewsInterestPoints)

Uses of ViewInterestPoints in net.preibisch.mvrecon.process.fusion.blk

Methods in net.preibisch.mvrecon.process.fusion.blk with parameters of type ViewInterestPoints

Modifier and Type	Method	Description
static Map<mpicbg.spim.data.sequence.ViewId,List<SplitImgLoaderThinPlateSplineFusion.DonatedNail>>	SplitImgLoaderThinPlateSplineFusion.computeCrossViewNailDonations(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, Collection<? extends mpicbg.spim.data.sequence.ViewId> underlyingViewIds, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Compute cross-view nail donations across all underlying views in one pass.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences)	Backward-compatible overload — correspondence midpoints but no corner anchors.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius)	Backward-compatible overload — corner anchors with N=2 (corners only).
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis)	Backward-compatible overload — no landmark visitor.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — no donated nails.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor, List<SplitImgLoaderThinPlateSplineFusion.DonatedNail> donatedNails)	Build TPS Landmarks for one underlying view U.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — visitor only, no per-split schedule, no donated nails.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences)	Backward-compatible overload — correspondence midpoints, no corner anchors.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius)	Backward-compatible overload — corner anchors with N=2 (corners only).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis)	Backward-compatible overload — no landmark visitor.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — visitor only, no per-split schedule.

Uses of ViewInterestPoints in net.preibisch.mvrecon.process.interestpointdetection

Methods in net.preibisch.mvrecon.process.interestpointdetection with parameters of type ViewInterestPoints

Modifier and Type	Method	Description
static HashMap<String,Integer>	InterestPointTools.getAllCorrespondingInterestPointMap(ViewInterestPoints interestPoints, Collection<? extends mpicbg.spim.data.sequence.ViewId> views)
static HashMap<String,Integer>	InterestPointTools.getAllInterestPointMap(ViewInterestPoints interestPoints, Collection<? extends mpicbg.spim.data.sequence.ViewId> views)