BioFormatsFormat.Reader (SCIFIO Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.AbstractContextual
- - org.scijava.plugin.AbstractRichPlugin
  - - io.scif.AbstractSCIFIOPlugin
    - - io.scif.AbstractHasFormat
      - io.scif.AbstractHasSource
        
        io.scif.AbstractGroupable
        
        io.scif.AbstractReader<M,ByteArrayPlane>
        
        io.scif.ByteArrayReader<BioFormatsFormat.Metadata>
        
        io.scif.bf.BioFormatsFormat.Reader

All Implemented Interfaces:

Groupable, HasFormat, HasSource, Reader, SCIFIOPlugin, TypedReader<BioFormatsFormat.Metadata,ByteArrayPlane>, Comparable<Prioritized>, Contextual, Identifiable, Locatable, Logged, HasPluginInfo, RichPlugin, SciJavaPlugin, Prioritized, Versioned

Enclosing class:

BioFormatsFormat
```
public static class BioFormatsFormat.Reader
extends ByteArrayReader<BioFormatsFormat.Metadata>
```

Constructor Summary

Constructors
Constructor and Description

Reader()

Constructors
Constructor and Description
`Reader()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected String[]`	`createDomainArray()`
`ByteArrayPlane`	`openPlane(int imageIndex, long planeIndex, ByteArrayPlane plane, Interval bounds, SCIFIOConfig config)`

Methods inherited from class io.scif.ByteArrayReader
createPlane, createPlane

Methods inherited from class io.scif.AbstractReader
castToTypedPlane, close, getCurrentLocation, getDomains, getHandle, getImageCount, getMetadata, getOptimalTileHeight, getOptimalTileWidth, getPlaneClass, getPlaneCount, hasCompanionFiles, isNormalized, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, openPlane, readPlane, readPlane, readPlane, readPlane, setMetadata, setMetadata, setNormalized, setSource, setSource, setSource, setSource

Methods inherited from class io.scif.AbstractGroupable
fileGroupOption, isSingleFile

Methods inherited from class io.scif.AbstractHasSource
close

Methods inherited from class io.scif.AbstractHasFormat
asBrowsableLocation, asBrowsableLocation, getFormat, getFormatName

Methods inherited from class io.scif.AbstractSCIFIOPlugin
getVersion, log

Methods inherited from class org.scijava.plugin.AbstractRichPlugin
getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual
context, getContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface io.scif.HasFormat
getFormat, getFormatName

Methods inherited from interface io.scif.SCIFIOPlugin
getVersion, log

Methods inherited from interface org.scijava.plugin.RichPlugin
getIdentifier

Methods inherited from interface org.scijava.Contextual
context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized
compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo
getInfo, setInfo

Methods inherited from interface org.scijava.Locatable
getLocation

Methods inherited from interface io.scif.HasSource
close

Methods inherited from interface io.scif.Groupable
fileGroupOption, isSingleFile

Constructor Detail
- Reader
```
public Reader()
```

Method Detail

openPlane

public ByteArrayPlane openPlane(int imageIndex,
                                long planeIndex,
                                ByteArrayPlane plane,
                                Interval bounds,
                                SCIFIOConfig config)
                         throws FormatException,
                                IOException

Throws:: FormatException; IOException

createDomainArray
```
protected String[] createDomainArray()
```
Specified by:

createDomainArray in class AbstractReader<BioFormatsFormat.Metadata,ByteArrayPlane>

Class BioFormatsFormat.Reader

Constructor Summary

Method Summary

Methods inherited from class io.scif.ByteArrayReader

Methods inherited from class io.scif.AbstractReader

Methods inherited from class io.scif.AbstractGroupable

Methods inherited from class io.scif.AbstractHasSource

Methods inherited from class io.scif.AbstractHasFormat

Methods inherited from class io.scif.AbstractSCIFIOPlugin

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

Methods inherited from class org.scijava.AbstractContextual

Methods inherited from class java.lang.Object

Methods inherited from interface io.scif.HasFormat

Methods inherited from interface io.scif.SCIFIOPlugin

Methods inherited from interface org.scijava.plugin.RichPlugin

Methods inherited from interface org.scijava.Contextual

Methods inherited from interface org.scijava.Prioritized

Methods inherited from interface org.scijava.plugin.HasPluginInfo

Methods inherited from interface org.scijava.Locatable

Methods inherited from interface io.scif.HasSource

Methods inherited from interface io.scif.Groupable

Constructor Detail

Reader

Method Detail

openPlane

createDomainArray