Constructor Detail

• MiniBioformatsTool

  public MiniBioformatsTool(String fullImagePath)
                     throws Exception

  Throws:

  Exception

Method Detail

• getReader

  public ImageProcessorReader getReader()

• getProcess

  public ImportProcess getProcess()

• getOptions

  public ImporterOptions getOptions()

• getTiffInfo

  public String getTiffInfo()

• TIFFINFO

  public static String TIFFINFO(String path)
                         throws org.apache.commons.imaging.ImageReadException,
                                IOException,
                                FormatException

  Throws:

  org.apache.commons.imaging.ImageReadException

  IOException

  FormatException

• attachROIStoImage

  public static void attachROIStoImage(ij.ImagePlus imp,
                                       ArrayList<ArrayList<Float>> vertices)

• extractDimensionsFromBFReader

  public int[] extractDimensionsFromBFReader()

• extractDimensionsFromBFReader

  public int[] extractDimensionsFromBFReader(int imageIndex)

• extractDimensionsFromOMEXML

  public int[] extractDimensionsFromOMEXML()

• extractDimensionsFromOMEXML

  public int[] extractDimensionsFromOMEXML(int imageIndex)

• extractXMLasDOM

  public Element extractXMLasDOM()

• extractXMLasString

  public String extractXMLasString()

• close

  public void close()
             throws IOException

  Throws:

  IOException

• finalize

  protected void finalize()
                   throws Throwable

  Overrides:

  finalize in class Object

  Throws:

  Throwable