Package | Description |
---|---|
net.imagej | |
net.imagej.axis | |
net.imagej.display | |
net.imagej.interval | |
net.imagej.ops | |
net.imagej.sampler | |
net.imagej.space |
Modifier and Type | Method and Description |
---|---|
CalibratedAxis |
DefaultDataset.axis(int d) |
Modifier and Type | Method and Description |
---|---|
default Optional<CalibratedAxis> |
Dataset.axis(AxisType type)
Gets the axis of the given type.
|
Modifier and Type | Method and Description |
---|---|
void |
DefaultDataset.axes(CalibratedAxis[] axes) |
void |
DefaultDataset.setAxes(CalibratedAxis[] axes) |
void |
Dataset.setAxes(CalibratedAxis[] axes) |
void |
DefaultDataset.setAxis(CalibratedAxis axis,
int d) |
Constructor and Description |
---|
ImgPlus(Img<T> img,
String name,
CalibratedAxis... axes) |
Modifier and Type | Interface and Description |
---|---|
interface |
LinearAxis
A
CalibratedAxis that scales coordinates along the axis in a linear
fashion. |
Modifier and Type | Class and Description |
---|---|
class |
AbstractCalibratedAxis
Abstract base class for
CalibratedAxis . |
class |
ChapmanRichardsAxis
Implement an axis that uses Chapman and Richards method of scaling.
|
class |
DefaultLinearAxis
Default implementation of
LinearAxis . |
class |
EnumeratedAxis
A
CalibratedAxis whose coordinate values are explicitly enumerated by
a list. |
class |
ExponentialAxis
ExponentialAxis is a
CalibratedAxis that scales raw values by the
equation y = a + b * exp(c + d*x) . |
class |
ExponentialRecoveryAxis
ExponentialRecoveryAxis is a
CalibratedAxis that scales raw values by
the equation y = a + b * (1 - exp(c + d*x)) . |
class |
GammaVariateAxis
GammaVariateAxis is a
CalibratedAxis that scales raw values by the
equation y = a * (x-b)^c*exp(-(x-b)/d) . |
class |
GaussianAxis
GaussianAxis is a
CalibratedAxis that scales raw values by the
equation y = a + (b-a)*exp(-(x-c)*(x-c)/(2*d*d)) . |
class |
IdentityAxis
IdentityAxis is a
CalibratedAxis whose raw and calibrated values are
the same. |
class |
InverseRodbardAxis
InverseRodbardAxis is a
CalibratedAxis that scales raw values by the
equation y = a*((x-b)/(c-x))^(1/d) . |
class |
LogLinearAxis
LogLinearAxis is a
CalibratedAxis that scales raw values by the
equation y = a + b * ln(c + d*x) . |
class |
PolynomialAxis
PolynomialAxis is a
CalibratedAxis that scale nonlinearly as a
polynomial of degree >= 2 . |
class |
PowerAxis
PowerAxis is a
CalibratedAxis that scales raw values by the equation
y = a + b*x^c. |
class |
RodbardAxis
RodbardAxis is a
CalibratedAxis that scales raw values by the
equation y = a + (b-a) / (1 + (x/c)^d) . |
class |
Variable1Axis
Abstract superclass for axes with one variable.
|
class |
Variable2Axis
Abstract superclass for axes with two variables.
|
class |
Variable3Axis
Abstract superclass for axes with three variables.
|
class |
Variable4Axis
Abstract superclass for axes with four variables.
|
class |
VariableAxis
An
CalibratedAxis whose calibration is defined by an equation with
one or more variables. |
Modifier and Type | Method and Description |
---|---|
CalibratedAxis |
CalibratedAxis.copy()
Creates an exact duplicate of this axis.
|
Modifier and Type | Method and Description |
---|---|
CalibratedAxis |
DefaultImageDisplay.axis(int d) |
Modifier and Type | Method and Description |
---|---|
void |
DefaultImageDisplay.axes(CalibratedAxis[] axes) |
void |
DefaultImageDisplay.setAxis(CalibratedAxis axis,
int d) |
Modifier and Type | Class and Description |
---|---|
class |
AbstractCalibratedRealInterval<A extends CalibratedAxis>
Abstract base class for
CalibratedRealInterval . |
interface |
CalibratedRealInterval<A extends CalibratedAxis>
A CalibratedRealInterval marries a
TypedRealInterval with a
CalibratedSpace . |
class |
CombinedCalibratedRealInterval<A extends CalibratedAxis,S extends CalibratedRealInterval<A>>
A
CombinedRealInterval that has calibrated axes. |
Constructor and Description |
---|
AbstractCalibratedRealInterval(double[] extents,
A... axes) |
AbstractCalibratedRealInterval(double[] min,
double[] max,
A... axes) |
AbstractCalibratedRealInterval(RealInterval interval,
A... axes) |
DefaultCalibratedRealInterval(double[] extents,
CalibratedAxis... axes) |
DefaultCalibratedRealInterval(double[] min,
double[] max,
CalibratedAxis... axes) |
DefaultCalibratedRealInterval(RealInterval interval,
CalibratedAxis... axes) |
Constructor and Description |
---|
DefaultCalibratedRealInterval(double[] min,
double[] max,
List<CalibratedAxis> axes) |
DefaultCalibratedRealInterval(double[] extents,
List<CalibratedAxis> axes) |
DefaultCalibratedRealInterval(RealInterval interval,
List<CalibratedAxis> axes) |
Modifier and Type | Method and Description |
---|---|
static <C extends CalibratedAxis> |
MetadataUtil.copyAndCleanTypedSpace(Interval inInterval,
CalibratedSpace<C> in,
CalibratedSpace<C> out)
copies the CalibratedAxis attributes from in to out.
|
static <C extends CalibratedAxis> |
MetadataUtil.copyTypedSpace(CalibratedSpace<C> in,
CalibratedSpace<C> out)
copies the CalibratedSpace attributes from in to out.
|
Modifier and Type | Method and Description |
---|---|
CalibratedAxis[] |
SamplingDefinition.getInputCalibratedAxes()
Returns the set of
CalibratedAxis 's that are present in the input
data. |
CalibratedAxis[] |
SamplingDefinition.getOutputCalibratedAxes()
Returns the set of
CalibratedAxis 's that will be present in the
output data. |
Modifier and Type | Class and Description |
---|---|
class |
AbstractCalibratedSpace<A extends CalibratedAxis>
Abstract base class for
CalibratedSpace . |
interface |
CalibratedSpace<A extends CalibratedAxis>
A Euclidean space whose dimensions have units and calibrations.
|
Constructor and Description |
---|
AbstractCalibratedSpace(A... axes) |
DefaultCalibratedSpace(CalibratedAxis... axes)
Constructs a new calibrated space with the given axes.
|
Constructor and Description |
---|
DefaultCalibratedSpace(List<CalibratedAxis> axes)
Constructs a new calibrated space with the given axes.
|
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