| Package | Description |
|---|---|
| sc.fiji.coloc.algorithms | |
| sc.fiji.coloc.gadgets |
| Modifier and Type | Method and Description |
|---|---|
MandersColocalization.MandersResults |
MandersColocalization.calculateMandersCorrelation(TwinCursor<T> cursor,
T thresholdCh1,
T thresholdCh2,
ThresholdMode tMode)
Calculates Manders' split coefficients, tM1 and tM2: with thresholds
|
<S extends RealType<S>> |
PearsonsCorrelation.calculatePearsons(TwinCursor<S> cursor,
double mean1,
double mean2,
S thresholdCh1,
S thresholdCh2,
ThresholdMode tMode)
Calculates Pearson's R value with the possibility to constraint in values.
|
static <T extends RealType<T>> |
PearsonsCorrelation.classicPearsons(TwinCursor<T> cursor,
double meanCh1,
double meanCh2,
T thresholdCh1,
T thresholdCh2,
ThresholdMode tMode) |
static <T extends RealType<T>> |
PearsonsCorrelation.fastPearsons(TwinCursor<T> cursor,
T thresholdCh1,
T thresholdCh2,
ThresholdMode tMode) |
| Modifier and Type | Method and Description |
|---|---|
static ThresholdMode |
ThresholdMode.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static ThresholdMode[] |
ThresholdMode.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static <T extends RealType<T>> |
MaskFactory.createMask(RandomAccessibleInterval<T> ch1,
RandomAccessibleInterval<T> ch2,
T threshold1,
T threshold2,
ThresholdMode tMode,
MaskFactory.CombinationMode cMode)
Create a new mask based on a threshold condition for two images.
|
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