Uses of Class sc.fiji.coloc.algorithms.MissingPreconditionException (Fiji Javadocs 0-SNAPSHOT API)

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Package Description

sc.fiji.coloc

sc.fiji.coloc.algorithms

sc.fiji.coloc.gadgets

Uses of MissingPreconditionException in sc.fiji.coloc

Methods in sc.fiji.coloc that throw MissingPreconditionException
Modifier and Type	Method and Description
`void`	Coloc_2.`colocalise(Img<T> image1, Img<T> image2, Coloc_2.BoundingBox roi, Img<T> mask)` Call this method to run a whole colocalisation configuration, all selected algorithms get run on the supplied images.
`AnalysisResults<T>`	Coloc_2.`colocalise(Img<T> image1, Img<T> image2, Coloc_2.BoundingBox roi, Img<T> mask, List<ResultHandler<T>> extraHandlers)` Call this method to run a whole colocalisation configuration, all selected algorithms get run on the supplied images.
`protected RandomAccessibleInterval<T>`	Coloc_2.`createMaskImage(RandomAccessibleInterval<T> image, RandomAccessibleInterval<BitType> mask, long[] offset, long[] size)` This method duplicates the given images, but respects ROIs if present.

Uses of MissingPreconditionException in sc.fiji.coloc.algorithms

Methods in sc.fiji.coloc.algorithms that throw MissingPreconditionException
Modifier and Type	Method and Description
`<S extends RealType<S>> double`	PearsonsCorrelation.`calculatePearsons(RandomAccessibleInterval<S> img1, RandomAccessibleInterval<S> img2)` Calculates Pearson's R value without any constraint in values, thus it uses no thresholds.
`<S extends RealType<S>> double`	PearsonsCorrelation.`calculatePearsons(RandomAccessibleInterval<S> img1, RandomAccessibleInterval<S> img2, RandomAccessibleInterval<BitType> mask)` Calculates Pearson's R value without any constraint in values, thus it uses no thresholds.
`<S extends RealType<S>> double`	PearsonsCorrelation.`calculatePearsons(TwinCursor<S> cursor, double mean1, double mean2, S thresholdCh1, S thresholdCh2, ThresholdMode tMode)` Calculates Pearson's R value with the possibility to constraint in values.
`static <T extends RealType<T>> double`	PearsonsCorrelation.`classicPearsons(TwinCursor<T> cursor, double meanCh1, double meanCh2)` Calculates Person's R value by using a Classic implementation of the algorithm.
`static <T extends RealType<T>> double`	PearsonsCorrelation.`classicPearsons(TwinCursor<T> cursor, double meanCh1, double meanCh2, T thresholdCh1, T thresholdCh2, ThresholdMode tMode)`
`void`	SpearmanRankCorrelation.`execute(DataContainer<T> container)`
`void`	PearsonsCorrelation.`execute(DataContainer<T> container)`
`void`	MandersColocalization.`execute(DataContainer<T> container)`
`void`	LiICQ.`execute(DataContainer<T> container)`
`void`	LiHistogram2D.`execute(DataContainer<T> container)`
`void`	KendallTauRankCorrelation.`execute(DataContainer<T> container)`
`void`	InputCheck.`execute(DataContainer<T> container)`
`void`	Histogram2D.`execute(DataContainer<T> container)`
`void`	CostesSignificanceTest.`execute(DataContainer<T> container)` Builds a list of blocks that represent the images.
`void`	AutoThresholdRegression.`execute(DataContainer<T> container)`
`abstract void`	Algorithm.`execute(DataContainer<T> container)` Executes the previously initialized `Algorithm`.
`static <T extends RealType<T>> double`	PearsonsCorrelation.`fastPearsons(TwinCursor<T> cursor)` Calculates Person's R value by using a fast implementation of the algorithm.
`static <T extends RealType<T>> double`	PearsonsCorrelation.`fastPearsons(TwinCursor<T> cursor, T thresholdCh1, T thresholdCh2, ThresholdMode tMode)`
`protected void`	CostesSignificanceTest.`generateBlocks(RandomAccessible<T> img, List<IterableInterval<T>> blockList, double[] offset, double[] size)` This method drives the creation of RegionOfInterest-Cursors on the given image.

Uses of MissingPreconditionException in sc.fiji.coloc.gadgets

Methods in sc.fiji.coloc.gadgets that throw MissingPreconditionException
Modifier and Type	Method and Description
`protected void`	DataContainer.`adjustRoiOffset(long[] oldOffset, long[] newOffset, long[] dimensions)` Make sure that the ROI offset has the same dimensionality as the image.
`protected void`	DataContainer.`adjustRoiSize(long[] oldSize, long[] newSize, long[] dimensions, long[] offset)` Transforms a ROI size array to a dimensionality.
`static RandomAccessibleInterval<BitType>`	MaskFactory.`createMask(long[] dim, long[] roiOffset, long[] roiDim)` Create a new mask image with a defined size and preset content.

Constructors in sc.fiji.coloc.gadgets that throw MissingPreconditionException
Constructor and Description
`DataContainer(RandomAccessibleInterval<T> src1, RandomAccessibleInterval<T> src2, int ch1, int ch2, String name1, String name2, long[] offset, long[] size)` Creates a new `DataContainer` for a specific set of image and channel combination.
`DataContainer(RandomAccessibleInterval<T> src1, RandomAccessibleInterval<T> src2, int ch1, int ch2, String name1, String name2, RandomAccessibleInterval<T> mask, long[] offset, long[] size)` Creates a new `DataContainer` for a specific set of image and channel combination.

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