| Package | Description |
|---|---|
| bdv.ij.export | |
| mpicbg.spim.data.generic.base | |
| mpicbg.spim.data.generic.sequence | |
| mpicbg.spim.data.sequence | |
| spim.fiji.plugin.queryXML | |
| spim.fiji.spimdata |
| Modifier and Type | Class and Description |
|---|---|
class |
ViewSetupWrapper
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
XmlIoEntity<T extends Entity>
Writes and reads objects of a specific subclass of
Entity as XML
elements. |
class |
XmlIoEntityMap<T extends Entity>
Writes and reads collections of a specific
Entity subclass as an XML section. |
| Modifier and Type | Class and Description |
|---|---|
class |
NamedEntity
An
Entity that has a name. |
| Modifier and Type | Method and Description |
|---|---|
static <T extends Entity> |
Entity.idMap(Collection<T> values)
Helper method to create a id-to-entity map from a collection of entities.
|
static <T extends Entity,L extends List<T>> |
Entity.sortById(L list)
Helper method to sort a list of entities by ascending id.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
EntityUtils.changeIds(Collection<? extends Entity> entities,
int... oldIdToNewIdMap) |
static void |
EntityUtils.changeIds(Collection<? extends Entity> entities,
Map<Integer,Integer> oldIdToNewIdMap) |
static String |
ViewSetupAttributes.getNameForClass(Class<? extends Entity> klass) |
| Modifier and Type | Class and Description |
|---|---|
class |
BasicViewSetup
An view setup is an
Entity that may have a name, image size, and voxel size. |
| Modifier and Type | Field and Description |
|---|---|
protected HashMap<String,HashMap<Integer,? extends Entity>> |
XmlIoBasicViewSetup.attributeMap
Maps attribute tag name to map from id to entity.
|
| Modifier and Type | Method and Description |
|---|---|
<T extends Entity> |
BasicViewSetup.getAttribute(Class<T> attributeClass) |
<T extends Entity> |
BasicViewSetup.setAttribute(T attribute) |
| Modifier and Type | Method and Description |
|---|---|
Map<String,Entity> |
BasicViewSetup.getAttributes() |
| Modifier and Type | Method and Description |
|---|---|
void |
XmlIoBasicViewSetup.setAttributeMap(HashMap<String,HashMap<Integer,? extends Entity>> attributeMap)
Set the attribute map.
|
protected void |
BasicViewSetup.setAttributes(Map<String,Entity> attributes) |
| Modifier and Type | Class and Description |
|---|---|
class |
Angle
Defines an angle which is part of the ViewSetup.
|
class |
Channel
Defines a channel which is part of the ViewSetup.
|
class |
Illumination
Defines an illumination direction which is part of the ViewSetup.
|
class |
Tile
Defines a tile that is part of the ViewSetup.
|
class |
TimePoint |
class |
ViewSetup
A collection of parameters describing the setup for a particular stack coming
from a SPIM microscope (angle, illumination direction, etc).
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
ViewSetup.setAttributes(Map<String,Entity> attributes)
Set the attributes map.
|
| Modifier and Type | Field and Description |
|---|---|
protected HashMap<String,List<Entity>> |
GenericLoadParseQueryXML.allAttributeInstances |
protected HashMap<String,List<Entity>> |
GenericLoadParseQueryXML.attributeInstancesToProcess |
| Modifier and Type | Method and Description |
|---|---|
protected <E extends Entity> |
GenericLoadParseQueryXML.query(int choice,
String attribute,
List<E> allEntities,
List<E> entitiesToProcess) |
| Modifier and Type | Method and Description |
|---|---|
protected static String[] |
GenericLoadParseQueryXML.buildEntityList(String attributeName,
List<? extends Entity> entityList,
boolean addTitle) |
| Modifier and Type | Class and Description |
|---|---|
class |
EmptyEntity |
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