FitProcessor (FLIMLib Javadocs 0-SNAPSHOT API)

java.lang.Object
- flimlib.flimj.ui.FitProcessor

public class FitProcessor
extends Object

ProcessingService

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class FitProcessor.FitType
The collection of all fitting algorithms

Nested Classes
Modifier and Type	Class and Description
`static class`	`FitProcessor.FitType` The collection of all fitting algorithms

Constructor Summary

Constructors
Constructor and Description

FitProcessor(Context context, FitParams<FloatType> params)

Constructors
Constructor and Description
`FitProcessor(Context context, FitParams<FloatType> params)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`destroy()`
`void`	`fitDataset()`
`BiFunction<Float,float[],Float>`	`getFitFunc()`
`double`	`getFitProgress()`
`FitParams<FloatType>`	`getIRFInfo()`
`int`	`getNParam()`
`RandomAccessibleInterval<FloatType>`	`getOrigTrans()`
`FitParams<FloatType>`	`getParams()`
`RandomAccessibleInterval<FloatType>`	`getPreviewImg(String option)`
`List<String>`	`getPreviewOptions()`
`FitResults`	`getResults()`
`<S extends Service> S`	`getService(Class<S> c)`
`void`	`invalidateGlobalTrans()` Force recalculate `globalTrans` when required.
`boolean`	`isPickingIRF()`
`void`	`refreshControllers()` Refreshes all controllers.
`void`	`setAlgo(FitProcessor.FitType algo)`
`void`	`setBinning(int size)`
`void`	`setControllers(AbstractCtrl... controllers)`
`void`	`setIRF(FitParams<FloatType> newIRF)`
`void`	`setIsPickingIRF(boolean isPickingIRF)`
`void`	`setPreviewOptions(List<String> options)`
`void`	`setPreviewPos(int x, int y, boolean irf)`
`void`	`submitRunnable(Runnable runnable)`
`static long[]`	`swapInLtAxis(long[] coordinates, int lifetimeAxis)` Permute the coordinates from ltDimension-last to ltDimension-at-ltAxis.
`static long[]`	`swapOutLtAxis(long[] coordinates, int lifetimeAxis)` Permute the coordinates from ltDimension-at-ltAxis to ltDimension-last.
`void`	`updateFit()`
`void`	`updateFit(boolean preview)`
`void`	`updateIRFRange()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FitProcessor

public FitProcessor(Context context,
                    FitParams<FloatType> params)

Method Detail

setControllers

public void setControllers(AbstractCtrl... controllers)

refreshControllers
```
public void refreshControllers()
```
Refreshes all controllers. Must be called from UI thread.

getParams

public FitParams<FloatType> getParams()

Returns:: the params

getIRFInfo

public FitParams<FloatType> getIRFInfo()

Returns:: the IRF info capsule

getResults
```
public FitResults getResults()
```
Returns:

the results

getOrigTrans

public RandomAccessibleInterval<FloatType> getOrigTrans()

Returns:: the original trans data

getService
```
public <S extends Service> S getService(Class<S> c)
```
Type Parameters:

S - Service type

Parameters:

c - the service class

Returns:

the SciJava service

updateFit
```
public void updateFit()
```

updateFit

public void updateFit(boolean preview)

setBinning
```
public void setBinning(int size)
```

setAlgo

public void setAlgo(FitProcessor.FitType algo)

setIsPickingIRF

public void setIsPickingIRF(boolean isPickingIRF)

isPickingIRF
```
public boolean isPickingIRF()
```

setIRF

public void setIRF(FitParams<FloatType> newIRF)

updateIRFRange
```
public void updateIRFRange()
```

getFitFunc

public BiFunction<Float,float[],Float> getFitFunc()

getNParam
```
public int getNParam()
```

setPreviewPos

public void setPreviewPos(int x,
                          int y,
                          boolean irf)

fitDataset
```
public void fitDataset()
```

getFitProgress
```
public double getFitProgress()
```
Returns:

a number between 0 and 1 that corresponds to the current percentage of fits completed

getPreviewOptions

public List<String> getPreviewOptions()

Returns:: the previewOptions

setPreviewOptions
```
public void setPreviewOptions(List<String> options)
```
Parameters:

options - the previewOptions to set

getPreviewImg

public RandomAccessibleInterval<FloatType> getPreviewImg(String option)

invalidateGlobalTrans
```
public void invalidateGlobalTrans()
```
Force recalculate globalTrans when required. Called upon e.g. intensity threshold change.

swapInLtAxis
```
public static long[] swapInLtAxis(long[] coordinates,
                                  int lifetimeAxis)
```
Permute the coordinates from ltDimension-last to ltDimension-at-ltAxis.

Parameters:

coordinates - the coordinates in ltDimension-last order

lifetimeAxis - the index of the lifetime axis

Returns:

the coordinates in ltDimension-at-ltAxis order

swapOutLtAxis
```
public static long[] swapOutLtAxis(long[] coordinates,
                                   int lifetimeAxis)
```
Permute the coordinates from ltDimension-at-ltAxis to ltDimension-last.

Parameters:

coordinates - the coordinates in ltDimension-at-ltAxis order

lifetimeAxis - the index of the lifetime axis

Returns:

the coordinates in ltDimension-last order

submitRunnable

public void submitRunnable(Runnable runnable)

destroy
```
public void destroy()
```

Class FitProcessor

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

FitProcessor

Method Detail

setControllers

refreshControllers

getParams

getIRFInfo

getResults

getOrigTrans

getService

updateFit

updateFit

setBinning

setAlgo

setIsPickingIRF

isPickingIRF

setIRF

updateIRFRange

getFitFunc

getNParam

setPreviewPos

fitDataset

getFitProgress

getPreviewOptions

setPreviewOptions

getPreviewImg

invalidateGlobalTrans

swapInLtAxis

swapOutLtAxis

submitRunnable

destroy