Method Detail

• anisotropy

  public static double anisotropy(ij.ImagePlus image)

  Calculates the degree of spatial calibration anisotropy.

  Spatial calibration is anisotropic if pixel width, height and depth are not equal.

  Parameters:

  image - an ImageJ1 style ImagePlus.

  Returns:

  Percentage of anisotropy. An isotropic image returns 0.0

• cleanDuplicate

  public static ij.ImagePlus cleanDuplicate(ij.ImagePlus image)

  Duplicates the image without changing the title of the copy, or cropping it to the ROI.

  Circumvents the default behaviour of ImagePlus.duplicate().

  Parameters:

  image - an ImageJ1 style ImagePlus.

  Returns:

  an unchanged copy of the image.

• is3D

  public static boolean is3D(ij.ImagePlus image)

  Checks if the image is 3D.

  Parameters:

  image - an ImageJ1 style ImagePlus.

  Returns:

  true if the image has more than one slice.

• isBinaryColour

  public static boolean isBinaryColour(ij.ImagePlus image)

  Checks if the image has only two different colours.

  Parameters:

  image - an ImageJ1 style ImagePlus.

  Returns:

  true if there are only two distinct pixel values present in the image, false if more.