Uses of Class
mpicbg.spim.data.SpimDataException

Packages that use SpimDataException

Package	Description
mpicbg.spim.data
mpicbg.spim.data.generic
mpicbg.spim.data.generic.base
mpicbg.spim.data.generic.sequence
mpicbg.spim.data.registration
mpicbg.spim.data.sequence

Uses of SpimDataException in mpicbg.spim.data

Subclasses of SpimDataException in mpicbg.spim.data

Modifier and Type	Class and Description
class	SpimDataInstantiationException This exception is thrown when SpimData entities cannot be constructed (while loading).
class	SpimDataIOException This exception is thrown when an IO error occurs while reading or writing an XML file.

Methods in mpicbg.spim.data that throw SpimDataException

Modifier and Type	Method and Description
static void	SpimDataExample2.exampleSequenceDescription()
static void	SpimDataExample2.exampleTimePoints()
static void	SpimDataExample2.exampleViewRegistrations()
static void	SpimDataExample2.exampleViewSetups()
static void	SpimDataExample2.main(String[] args)

Uses of SpimDataException in mpicbg.spim.data.generic

Methods in mpicbg.spim.data.generic that throw SpimDataException

Modifier and Type	Method and Description
T	XmlIoAbstractSpimData.fromXml(org.jdom2.Element root, File xmlFile)
T	XmlIoAbstractSpimData.fromXml(org.jdom2.Element root, URI xmlURI)
T	XmlIoAbstractSpimData.load(Reader xmlReader, URI xmlURI) Load SpimData from the given Reader (that can read from a local file, or S3 for example).
T	XmlIoAbstractSpimData.load(String xmlFilename)
void	XmlIoAbstractSpimData.save(T spimData, String xmlFilename)
void	XmlIoAbstractSpimData.save(T spimData, Writer xmlWriter, URI xmlURI) Write spimData to the given Writer (that can write to a local file, or S3 for example).
org.jdom2.Element	XmlIoAbstractSpimData.toXml(T spimData, File xmlFileDirectory)
org.jdom2.Element	XmlIoAbstractSpimData.toXml(T spimData, URI xmlParentURI)

Uses of SpimDataException in mpicbg.spim.data.generic.base

Methods in mpicbg.spim.data.generic.base that throw SpimDataException

Modifier and Type	Method and Description
HashMap<Integer,T>	XmlIoEntityMap.fromXml(org.jdom2.Element elem)
protected T	XmlIoSingleton.fromXml(org.jdom2.Element elem) Create an object from the given element.
T	XmlIoNamedEntity.fromXml(org.jdom2.Element elem)
T	XmlIoEntity.fromXml(org.jdom2.Element elem) Create an object from the given element.
org.jdom2.Element	XmlIoEntityMap.toXml(Collection<T> values) Add the values to a new XmlIoSingleton.getTag() element (in the iteration order of the collection).
org.jdom2.Element	XmlIoEntityMap.toXml(Map<Integer,? extends T> map) Sort the values in the entity map by id and add them to a new XmlIoSingleton.getTag() element.

Uses of SpimDataException in mpicbg.spim.data.generic.sequence

Methods in mpicbg.spim.data.generic.sequence that throw SpimDataException

Modifier and Type	Method and Description
T	XmlIoBasicViewSetup.fromXml(org.jdom2.Element elem)
HashMap<Integer,T>	XmlIoBasicViewSetups.fromXml(org.jdom2.Element elem)
T	XmlIoAbstractSequenceDescription.fromXml(org.jdom2.Element elem, File basePath)
T	XmlIoAbstractSequenceDescription.fromXml(org.jdom2.Element elem, URI basePathURI)
org.jdom2.Element	XmlIoBasicViewSetups.toXml(Collection<T> setups)
org.jdom2.Element	XmlIoAbstractSequenceDescription.toXml(T sequenceDescription, File basePath)
org.jdom2.Element	XmlIoAbstractSequenceDescription.toXml(T sequenceDescription, URI basePathURI)

Uses of SpimDataException in mpicbg.spim.data.registration

Methods in mpicbg.spim.data.registration that throw SpimDataException

Modifier and Type	Method and Description
ViewRegistrations	XmlIoViewRegistrations.fromXml(org.jdom2.Element elem) Load ViewRegistrations from the given DOM element.

Uses of SpimDataException in mpicbg.spim.data.sequence

Methods in mpicbg.spim.data.sequence that throw SpimDataException

Modifier and Type	Method and Description
MissingViews	XmlIoMissingViews.fromXml(org.jdom2.Element elem)
Angle	XmlIoAngle.fromXml(org.jdom2.Element elem)
Tile	XmlIoTile.fromXml(org.jdom2.Element elem)
TimePoints	XmlIoTimePoints.fromXml(org.jdom2.Element elem)
protected void	XmlIoTimePoints.fromXmlList(TimePoints timepoints, org.jdom2.Element elem) Create TimePointsPattern from < > element of type