mpicbg.spim.data.generic.sequence

Class XmlIoBasicViewSetup<T extends BasicViewSetup>

java.lang.Object

mpicbg.spim.data.generic.base.XmlIoEntity<T>

mpicbg.spim.data.generic.sequence.XmlIoBasicViewSetup<T>

public class XmlIoBasicViewSetup<T extends BasicViewSetup>
extends XmlIoEntity<T>

Field Summary

Fields

Modifier and Type	Field and Description
protected HashMap<String,HashMap<Integer,? extends Entity>>	attributeMap Maps attribute tag name to map from id to entity.

Fields inherited from class mpicbg.spim.data.generic.base.XmlIoEntity

handledTags

Constructor Summary

Constructors

Constructor and Description
XmlIoBasicViewSetup(Class<T> klass)

Method Summary

Modifier and Type	Method and Description
T	fromXml(org.jdom2.Element elem) Create an object from the given element.
protected static VoxelDimensions	getVoxelDimensions(org.jdom2.Element parent, String name)
protected static VoxelDimensions	getVoxelDimensions(org.jdom2.Element parent, String name, VoxelDimensions defaultValue)
void	setAttributeMap(HashMap<String,HashMap<Integer,? extends Entity>> attributeMap) Set the attribute map.
org.jdom2.Element	toXml(T setup) Create an XML element from the given object.
protected static org.jdom2.Element	voxelDimensionsElement(String name, VoxelDimensions voxelSize)

Methods inherited from class mpicbg.spim.data.generic.base.XmlIoEntity

getEntityClass, getTag

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

attributeMap

protected HashMap<String,HashMap<Integer,? extends Entity>> attributeMap

Maps attribute tag name to map from id to entity.

Constructor Detail

XmlIoBasicViewSetup

public XmlIoBasicViewSetup(Class<T> klass)

Method Detail

setAttributeMap

public void setAttributeMap(HashMap<String,HashMap<Integer,? extends Entity>> attributeMap)

Set the attribute map. This is a map from attribute tag name to a map from id to entity. For example, the key ( XmlIoEntity.getTag()) maps to a map from channel id to Channel.

toXml

public org.jdom2.Element toXml(T setup)

Description copied from class: XmlIoEntity

Create an XML element from the given object.

Overrides:

toXml in class XmlIoEntity<T extends BasicViewSetup>

fromXml

public T fromXml(org.jdom2.Element elem)
          throws SpimDataException

Description copied from class: XmlIoEntity

Create an object from the given element. Unhandled children of the element are stored as associated with the objects id and added to any XML element created for that id.

Overrides:

fromXml in class XmlIoEntity<T extends BasicViewSetup>

Throws:

SpimDataException

voxelDimensionsElement

protected static org.jdom2.Element voxelDimensionsElement(String name,
                                                          VoxelDimensions voxelSize)

getVoxelDimensions

protected static VoxelDimensions getVoxelDimensions(org.jdom2.Element parent,
                                                    String name)

getVoxelDimensions

protected static VoxelDimensions getVoxelDimensions(org.jdom2.Element parent,
                                                    String name,
                                                    VoxelDimensions defaultValue)