bdv.img.catmaid

Class CatmaidImageLoader

java.lang.Object

bdv.AbstractViewerSetupImgLoader<net.imglib2.type.numeric.ARGBType,net.imglib2.type.volatiles.VolatileARGBType>

bdv.img.catmaid.CatmaidImageLoader

All Implemented Interfaces:

ViewerImgLoader, ViewerSetupImgLoader<net.imglib2.type.numeric.ARGBType,net.imglib2.type.volatiles.VolatileARGBType>, mpicbg.spim.data.generic.sequence.BasicImgLoader, mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader, mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<net.imglib2.type.numeric.ARGBType>, mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<net.imglib2.type.numeric.ARGBType>

public class CatmaidImageLoader
extends AbstractViewerSetupImgLoader<net.imglib2.type.numeric.ARGBType,net.imglib2.type.volatiles.VolatileARGBType>
implements ViewerImgLoader

Field Summary

Fields inherited from class bdv.AbstractViewerSetupImgLoader

type, volatileType

Constructor Summary

Constructors

Constructor and Description
CatmaidImageLoader(long width, long height, long depth, double zScale, int numScales, String urlFormat, int tileWidth, int tileHeight)
CatmaidImageLoader(long width, long height, long depth, double zScale, int numScales, String urlFormat, int tileWidth, int tileHeight, boolean topLeft)
CatmaidImageLoader(long width, long height, long depth, double zScale, int numScales, String urlFormat, int tileWidth, int tileHeight, int blockWidth, int blockHeight)
CatmaidImageLoader(long width, long height, long depth, double zScale, int numScales, String urlFormat, int tileWidth, int tileHeight, int blockWidth, int blockHeight, boolean topLeft)
CatmaidImageLoader(long width, long height, long depth, double zScale, String urlFormat, int tileWidth, int tileHeight, int[][] blockDimensions)
CatmaidImageLoader(long width, long height, long depth, double zScale, String urlFormat, int tileWidth, int tileHeight, int[][] blockDimensions, boolean topLeft)

Method Summary

Modifier and Type	Method and Description
VolatileGlobalCellCache	getCacheControl()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.ARGBType>	getImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
double[][]	getMipmapResolutions()
net.imglib2.realtransform.AffineTransform3D[]	getMipmapTransforms()
static int	getNumScales(long width, long height, long tileWidth, long tileHeight)
ViewerSetupImgLoader<?,?>	getSetupImgLoader(int setupId)
net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileARGBType>	getVolatileImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
int	numMipmapLevels()
protected <T extends net.imglib2.type.NativeType<T>> VolatileCachedCellImg<T,net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray>	prepareCachedImage(int timepointId, int setupId, int level, net.imglib2.cache.volatiles.LoadingStrategy loadingStrategy, T type) Create a VolatileCachedCellImg backed by the cache.
void	setCache(VolatileGlobalCellCache cache)

Methods inherited from class bdv.AbstractViewerSetupImgLoader

getImage, getImageType, getVolatileImageType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface bdv.ViewerImgLoader

setCreatedSharedQueue, setNumFetcherThreads

Constructor Detail

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight,
                          int[][] blockDimensions,
                          boolean topLeft)

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight,
                          int[][] blockDimensions)

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          int numScales,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight,
                          int blockWidth,
                          int blockHeight,
                          boolean topLeft)

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          int numScales,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight,
                          int blockWidth,
                          int blockHeight)

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          int numScales,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight,
                          boolean topLeft)

CatmaidImageLoader

public CatmaidImageLoader(long width,
                          long height,
                          long depth,
                          double zScale,
                          int numScales,
                          String urlFormat,
                          int tileWidth,
                          int tileHeight)

Method Detail

getNumScales

public static final int getNumScales(long width,
                                     long height,
                                     long tileWidth,
                                     long tileHeight)

prepareCachedImage

protected <T extends net.imglib2.type.NativeType<T>> VolatileCachedCellImg<T,net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray> prepareCachedImage(int timepointId,
                                                                                                                                                                  int setupId,
                                                                                                                                                                  int level,
                                                                                                                                                                  net.imglib2.cache.volatiles.LoadingStrategy loadingStrategy,
                                                                                                                                                                  T type)

Create a VolatileCachedCellImg backed by the cache. The type should be either ARGBType and VolatileARGBType.

getCacheControl

public VolatileGlobalCellCache getCacheControl()

Specified by:

getCacheControl in interface ViewerImgLoader

getSetupImgLoader

public ViewerSetupImgLoader<?,?> getSetupImgLoader(int setupId)

Specified by:

getSetupImgLoader in interface ViewerImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.generic.sequence.BasicImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader

getImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.ARGBType> getImage(int timepointId,
                                                                                        int level,
                                                                                        mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getImage in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<net.imglib2.type.numeric.ARGBType>

getVolatileImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileARGBType> getVolatileImage(int timepointId,
                                                                                                          int level,
                                                                                                          mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getVolatileImage in interface ViewerSetupImgLoader<net.imglib2.type.numeric.ARGBType,net.imglib2.type.volatiles.VolatileARGBType>

getMipmapResolutions

public double[][] getMipmapResolutions()

Specified by:

getMipmapResolutions in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<net.imglib2.type.numeric.ARGBType>

getMipmapTransforms

public net.imglib2.realtransform.AffineTransform3D[] getMipmapTransforms()

Specified by:

getMipmapTransforms in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<net.imglib2.type.numeric.ARGBType>

numMipmapLevels

public int numMipmapLevels()

Specified by:

numMipmapLevels in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<net.imglib2.type.numeric.ARGBType>

setCache

public void setCache(VolatileGlobalCellCache cache)