bdv.img.cache

Class VolatileGlobalCellCache

java.lang.Object

bdv.img.cache.VolatileGlobalCellCache

All Implemented Interfaces:

CacheControl

public class VolatileGlobalCellCache
extends Object
implements CacheControl

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	VolatileGlobalCellCache.Key Key for a cell identified by timepoint, setup, level, and index (flattened spatial coordinate).

Nested classes/interfaces inherited from interface bdv.cache.CacheControl

CacheControl.CacheControls, CacheControl.Dummy

Field Summary

Fields

Modifier and Type	Field and Description
protected net.imglib2.cache.LoaderCache<VolatileGlobalCellCache.Key,net.imglib2.img.cell.Cell<?>>	backingCache

Constructor Summary

Constructors

Constructor and Description
VolatileGlobalCellCache(net.imglib2.cache.queue.BlockingFetchQueues<Callable<?>> queue) Create a new global cache with the specified fetch queue.
VolatileGlobalCellCache(int maxNumLevels, int numFetcherThreads) Create a new global cache with a new fetch queue served by the specified number of fetcher threads.

Method Summary

Modifier and Type	Method and Description
void	clearCache() Remove all references to loaded data.
<T extends net.imglib2.type.NativeType<T>,A extends net.imglib2.img.basictypeaccess.DataAccess> VolatileCachedCellImg<T,A>	createImg(net.imglib2.img.cell.CellGrid grid, int timepoint, int setup, int level, net.imglib2.cache.volatiles.CacheHints cacheHints, CacheArrayLoader<A> cacheArrayLoader, T type) Create a VolatileCachedCellImg backed by this VolatileGlobalCellCache, using the provided CacheArrayLoader to load data.
<T extends net.imglib2.type.NativeType<T>,A extends net.imglib2.img.basictypeaccess.DataAccess> VolatileCachedCellImg<T,A>	createImg(net.imglib2.img.cell.CellGrid grid, int timepoint, int setup, int level, net.imglib2.cache.volatiles.CacheHints cacheHints, SimpleCacheArrayLoader<A> cacheArrayLoader, T type) Create a VolatileCachedCellImg backed by this VolatileGlobalCellCache, using the provided SimpleCacheArrayLoader to load data.
void	ensureNumPriorities(int numPriorities) Make sure that the fetch queue has at least numPriorities priority levels.
void	prepareNextFrame() Prepare the cache for providing data for the "next frame", by moving pending cell request to the prefetch queue (BlockingFetchQueues.clearToPrefetch()).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

backingCache

protected final net.imglib2.cache.LoaderCache<VolatileGlobalCellCache.Key,net.imglib2.img.cell.Cell<?>> backingCache

Constructor Detail

VolatileGlobalCellCache

public VolatileGlobalCellCache(int maxNumLevels,
                               int numFetcherThreads)

Create a new global cache with a new fetch queue served by the specified number of fetcher threads.

Parameters:

maxNumLevels - the highest occurring mipmap level plus 1.

numFetcherThreads - how many threads should be created to load data.

VolatileGlobalCellCache

public VolatileGlobalCellCache(net.imglib2.cache.queue.BlockingFetchQueues<Callable<?>> queue)

Create a new global cache with the specified fetch queue. (It is the callers responsibility to create fetcher threads that serve the queue.)

Parameters:

queue - queue to which asynchronous data loading jobs are submitted

Method Detail

prepareNextFrame

public void prepareNextFrame()

Prepare the cache for providing data for the "next frame", by moving pending cell request to the prefetch queue (BlockingFetchQueues.clearToPrefetch()).

Specified by:

prepareNextFrame in interface CacheControl

ensureNumPriorities

public void ensureNumPriorities(int numPriorities)

Make sure that the fetch queue has at least numPriorities priority levels.

Typically, numPriorities should be the number of mipmap levels. Then loading of lower-resolution blocks can be prioritized over higher-resolution blocks.

clearCache

public void clearCache()

Remove all references to loaded data.

Note that there may be pending cell requests which will re-populate the cache unless the fetch queue is cleared as well.

createImg

public <T extends net.imglib2.type.NativeType<T>,A extends net.imglib2.img.basictypeaccess.DataAccess> VolatileCachedCellImg<T,A> createImg(net.imglib2.img.cell.CellGrid grid,
                                                                                                                                            int timepoint,
                                                                                                                                            int setup,
                                                                                                                                            int level,
                                                                                                                                            net.imglib2.cache.volatiles.CacheHints cacheHints,
                                                                                                                                            CacheArrayLoader<A> cacheArrayLoader,
                                                                                                                                            T type)

Create a VolatileCachedCellImg backed by this VolatileGlobalCellCache, using the provided CacheArrayLoader to load data.

Parameters:

grid -

timepoint -

setup -

level -

cacheHints -

cacheArrayLoader -

type -

Returns:

createImg

public <T extends net.imglib2.type.NativeType<T>,A extends net.imglib2.img.basictypeaccess.DataAccess> VolatileCachedCellImg<T,A> createImg(net.imglib2.img.cell.CellGrid grid,
                                                                                                                                            int timepoint,
                                                                                                                                            int setup,
                                                                                                                                            int level,
                                                                                                                                            net.imglib2.cache.volatiles.CacheHints cacheHints,
                                                                                                                                            SimpleCacheArrayLoader<A> cacheArrayLoader,
                                                                                                                                            T type)

Create a VolatileCachedCellImg backed by this VolatileGlobalCellCache, using the provided SimpleCacheArrayLoader to load data.

Parameters:

grid -

timepoint -

setup -

level -

cacheHints -

cacheArrayLoader -

type -

Returns: