Module org.bigdataviewer.core

Package bdv.util

Class RandomAccessibleIntervalSource4D<T extends net.imglib2.type.numeric.NumericType<T>>

java.lang.Object

bdv.util.AbstractSource<T>

bdv.util.RandomAccessibleIntervalSource4D<T>

All Implemented Interfaces:

Source<T>

public class RandomAccessibleIntervalSource4D<T extends net.imglib2.type.numeric.NumericType<T>>
extends AbstractSource<T>

Field Summary

Fields

Modifier and Type	Field	Description
protected int	currentTimePointIndex

Fields inherited from class bdv.util.AbstractSource

interpolators, name, type, voxelDimensions

Constructor Summary

Constructors

Constructor	Description
RandomAccessibleIntervalSource4D(net.imglib2.RandomAccessibleInterval<T> img, T type, String name)
RandomAccessibleIntervalSource4D(net.imglib2.RandomAccessibleInterval<T> img, T type, net.imglib2.realtransform.AffineTransform3D sourceTransform, String name)

Method Summary

Modifier and Type	Method	Description
net.imglib2.RealRandomAccessible<T>	getInterpolatedSource(int t, int level, Interpolation method)	Get the 3D stack at timepoint index t, extended to infinity and interpolated.
net.imglib2.RandomAccessibleInterval<T>	getSource(int t, int level)	Get the 3D stack at timepoint index t.
void	getSourceTransform(int t, int level, net.imglib2.realtransform.AffineTransform3D transform)	Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.
boolean	isPresent(int t)	Is there a stack at timepoint index t?

Methods inherited from class bdv.util.AbstractSource

doBoundingBoxCulling, getInterpolatedMaskedSource, getMaskedSource, getName, getNumMipmapLevels, getType, getVoxelDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

currentTimePointIndex

protected int currentTimePointIndex

Constructor Detail

RandomAccessibleIntervalSource4D

public RandomAccessibleIntervalSource4D(net.imglib2.RandomAccessibleInterval<T> img,
                                        T type,
                                        String name)

RandomAccessibleIntervalSource4D

public RandomAccessibleIntervalSource4D(net.imglib2.RandomAccessibleInterval<T> img,
                                        T type,
                                        net.imglib2.realtransform.AffineTransform3D sourceTransform,
                                        String name)

Method Detail

isPresent

public boolean isPresent(int t)

Description copied from interface: Source

Is there a stack at timepoint index t?

Specified by:

isPresent in interface Source<T extends net.imglib2.type.numeric.NumericType<T>>

Overrides:

isPresent in class AbstractSource<T extends net.imglib2.type.numeric.NumericType<T>>

Parameters:

t - timepoint index

Returns:

true, if there is data for timepoint index t.

getSource

public net.imglib2.RandomAccessibleInterval<T> getSource(int t,
                                                         int level)

Description copied from interface: Source

Get the 3D stack at timepoint index t.

Parameters:

t - timepoint index

level - mipmap level

Returns:

the stack.

getInterpolatedSource

public net.imglib2.RealRandomAccessible<T> getInterpolatedSource(int t,
                                                                 int level,
                                                                 Interpolation method)

Description copied from interface: Source

Get the 3D stack at timepoint index t, extended to infinity and interpolated.

Specified by:

getInterpolatedSource in interface Source<T extends net.imglib2.type.numeric.NumericType<T>>

Overrides:

getInterpolatedSource in class AbstractSource<T extends net.imglib2.type.numeric.NumericType<T>>

Parameters:

t - timepoint index

level - mipmap level

method - interpolation method to use

Returns:

the extended and interpolated stack.

getSourceTransform

public void getSourceTransform(int t,
                               int level,
                               net.imglib2.realtransform.AffineTransform3D transform)

Description copied from interface: Source

Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.

Parameters:

t - timepoint index

level - mipmap level

transform - is set to the source-to-global transform, that transforms source coordinates into the global coordinates