Deprecated API

Contents

• Interfaces
• Classes
• Fields
• Methods
• Constructors

Interfaces

Interface	Description
bdv.viewer.VisibilityAndGrouping.UpdateListener

Classes

Class	Description
bdv.tools.boundingbox.BoundingBoxDialog	Use TransformedBoxSelectionDialog instead.
bdv.tools.brightness.BrightnessDialog
bdv.tools.brightness.SetupAssignments
bdv.tools.VisibilityAndGroupingDialog
bdv.util.VolatileRandomAccessibleIntervalMipmapSource	use VolatileSource
bdv.util.volatiles.SharedQueue	This class lives now in bigdataviewer-core. Use bdv.cache.SharedQueue instead.
bdv.viewer.state.SourceGroup
bdv.viewer.state.SourceState
bdv.viewer.state.ViewerState
bdv.viewer.VisibilityAndGrouping	This is not necessary anymore, because ViewerState can be modified directly. (See ViewerPanel.state().) Manage visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
bdv.viewer.VisibilityAndGrouping.Event

Fields

Field	Description
bdv.viewer.NavigationActions.ALIGN_PLANE

Methods

Method	Description
bdv.BigDataViewer.getInputTriggerConfig(ViewerOptions)	This method is no longer used internally. InputTriggerConfigs are now managed through KeymapManager.
bdv.BigDataViewer.getSetupAssignments()	Instead getViewer().state() returns the ViewerState that can be modified directly.
bdv.BigDataViewerActions.bookmarks(BookmarksEditor)
bdv.BigDataViewerActions.dialog(Actions, BrightnessDialog)
bdv.BigDataViewerActions.installActionBindings(InputActionBindings, BigDataViewer, KeyStrokeAdder.Factory)
bdv.BigDataViewerActions.manualTransform(ManualTransformationEditor)
bdv.BigDataViewerActions.toggleDialogAction(Dialog, String, String...)
bdv.export.WriteSequenceToHdf5.writeViewToHdf5PartitionFile(RandomAccessibleInterval<UnsignedShortType>, Partition, int, int, ExportMipmapInfo, boolean, boolean, ExportScalePyramid.LoopbackHeuristic, ExportScalePyramid.AfterEachPlane, int, ProgressWriter)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBox(ViewerState)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBoxReal(ViewerState)
bdv.tools.brightness.ConverterSetup.setViewer(RequestRepaint)
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerState, SetupAssignments)
bdv.tools.InitializeViewerState.initTransform(int, int, boolean, ViewerState)
bdv.ui.appearance.AppearanceManager.fromPrefs()	Prefs will be replaced eventually by directly using Appearance in BDV
bdv.ui.appearance.AppearanceManager.toPrefs()	Prefs will be replaced eventually by directly using Appearance in BDV
bdv.util.BdvFunctions.getUnusedSetupId(BigDataViewer)	Ok to use for now, but shouldn't be required in the future.
bdv.util.BdvHandle.getSetupAssignments()
bdv.util.PlaceHolderOverlayInfo.addVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener)	Use visibilityChangeListeners().add(listener) instead.
bdv.util.PlaceHolderOverlayInfo.removeVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener)	Use visibilityChangeListeners().remove(listener) instead.
bdv.util.volatiles.VolatileViews.wrapAsVolatile(RandomAccessibleInterval<T>, SharedQueue)	Use bdv.cache.SharedQueue instead of bdv.util.volatiles.SharedQueue
bdv.viewer.InteractiveDisplayCanvas.addOverlayRenderer(OverlayRenderer)	Use overlays().add(renderer) instead
bdv.viewer.InteractiveDisplayCanvas.removeOverlayRenderer(OverlayRenderer)	Use overlays().remove(renderer) instead
bdv.viewer.NavigationActions.alignPlaneAction(ViewerPanel, AbstractViewerPanel.AlignPlane, String...)
bdv.viewer.NavigationActions.alignPlanes(ViewerPanel)
bdv.viewer.NavigationActions.installActionBindings(InputActionBindings, ViewerPanel, KeyStrokeAdder.Factory)
bdv.viewer.NavigationActions.installAlignPlaneAction(Actions, AbstractViewerPanel, AbstractViewerPanel.AlignPlane, String...)
bdv.viewer.NavigationActions.modes(ViewerPanel)
bdv.viewer.NavigationActions.sources(ViewerPanel)
bdv.viewer.NavigationActions.time(ViewerPanel)
bdv.viewer.overlay.MultiBoxOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.ScaleBarOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.SourceInfoOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.render.AccumulateProjectorFactory.createAccumulateProjector(ArrayList<VolatileProjector>, ArrayList<Source<?>>, ArrayList<? extends RandomAccessible<? extends A>>, RandomAccessibleInterval<A>, int, ExecutorService)	Use AccumulateProjectorFactory.createProjector(List, List, List, RandomAccessibleInterval, int, ExecutorService) instead. The new variant of the method is named "createProjector" instead of "createAccumulateProjector" because it has the same erasure. The default implementation of "createProjector" is forwarded to the (deprecated) "createAccumulateProjector", so existing AccumulateProjectorFactory implementations should keep working.
bdv.viewer.state.ViewerState.isSingleSourceMode()	replaced by ViewerState.getDisplayMode()
bdv.viewer.state.ViewerState.setSingleSourceMode(boolean)	replaced by ViewerState.setDisplayMode(DisplayMode)
bdv.viewer.ViewerPanel.addGroup(SourceGroup)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.addInterpolationModeListener(InterpolationModeListener)	Use interpolationModeListeners().add( listener ).
bdv.viewer.ViewerPanel.addRenderTransformListener(TransformListener<AffineTransform3D>)	Use renderTransformListeners().add( listener ).
bdv.viewer.ViewerPanel.addSource(SourceAndConverter<?>)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.addSources(Collection<SourceAndConverter<?>>)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.addTimePointListener(TimePointListener)	Use timePointListeners().add( listener ).
bdv.viewer.ViewerPanel.addTransformListener(TransformListener<AffineTransform3D>)	Use transformListeners().add( listener ).
bdv.viewer.ViewerPanel.getState()	Use ViewerPanel.state() instead. Get a copy of the current ViewerState.
bdv.viewer.ViewerPanel.getVisibilityAndGrouping()	Modify ViewerPanel.state() directly Returns the VisibilityAndGrouping that can be used to modify visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
bdv.viewer.ViewerPanel.removeAllSources()	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeGroup(SourceGroup)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeInterpolationModeListener(InterpolationModeListener)	Use interpolationModeListeners().remove( listener ).
bdv.viewer.ViewerPanel.removeSource(Source<?>)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeSources(Collection<Source<?>>)	Modify ViewerPanel.state() directly
bdv.viewer.ViewerPanel.removeTimePointListener(TimePointListener)	Use timePointListeners().remove( listener ).
bdv.viewer.ViewerPanel.removeTransformListener(TransformListener<AffineTransform3D>)	Use transformListeners().remove( listener ) or renderTransformListeners().remove( listener ) (whichever the listener was added to).
bdv.viewer.ViewerPanel.setCurrentViewerTransform(AffineTransform3D)	Modify ViewerPanel.state() directly (state().setViewerTransform(t))
bdv.viewer.VisibilityAndGrouping.addSourceToGroup(int, int)
bdv.viewer.VisibilityAndGrouping.addUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.viewer.VisibilityAndGrouping.getCurrentGroup()
bdv.viewer.VisibilityAndGrouping.getCurrentSource()
bdv.viewer.VisibilityAndGrouping.getDisplayMode()
bdv.viewer.VisibilityAndGrouping.getSourceGroups()
bdv.viewer.VisibilityAndGrouping.getSources()
bdv.viewer.VisibilityAndGrouping.getState()
bdv.viewer.VisibilityAndGrouping.isFusedEnabled()
bdv.viewer.VisibilityAndGrouping.isGroupActive(int)
bdv.viewer.VisibilityAndGrouping.isGroupingEnabled()
bdv.viewer.VisibilityAndGrouping.isSourceActive(int)
bdv.viewer.VisibilityAndGrouping.isSourceVisible(int)
bdv.viewer.VisibilityAndGrouping.numGroups()
bdv.viewer.VisibilityAndGrouping.numSources()
bdv.viewer.VisibilityAndGrouping.removeSourceFromGroup(int, int)
bdv.viewer.VisibilityAndGrouping.removeUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.viewer.VisibilityAndGrouping.setCurrentGroup(int)
bdv.viewer.VisibilityAndGrouping.setCurrentGroupOrSource(int)
bdv.viewer.VisibilityAndGrouping.setCurrentSource(int)
bdv.viewer.VisibilityAndGrouping.setDisplayMode(DisplayMode)
bdv.viewer.VisibilityAndGrouping.setFusedEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.setGroupingEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupName(int, String)
bdv.viewer.VisibilityAndGrouping.setSourceActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.toggleActiveGroupOrSource(int)
bdv.viewer.VisibilityAndGrouping.update(int)

Constructors

Constructor	Description
bdv.BigDataViewer(ArrayList<ConverterSetup>, ArrayList<SourceAndConverter<?>>, AbstractSpimData<?>, int, CacheControl, String, ProgressWriter, ViewerOptions)
bdv.BigDataViewerActions(KeyStrokeAdder.Factory)
bdv.img.cache.VolatileCachedCellImg(CellGrid, Fraction, Function<NativeImg<T, ? super A>, T>, CacheHints, VolatileCachedCellImg.Get<Cell<A>>)	Construct with a VolatileCache using VolatileCachedCellImg(CellGrid, NativeType, CacheHints, VolatileCache).
bdv.util.volatiles.SharedQueue(int, int)
bdv.viewer.NavigationActions(KeyStrokeAdder.Factory)
bdv.viewer.render.AccumulateProjector(List<VolatileProjector>, List<? extends RandomAccessible<? extends A>>, RandomAccessibleInterval<B>, int, ExecutorService)	Use AccumulateProjector(List, List, RandomAccessibleInterval). The numThreads and executorService arguments are ignored.
bdv.viewer.VisibilityAndGrouping(ViewerState)