Module org.bigdataviewer.core

Package bdv.img.hdf5

Class Hdf5ImageLoader.SetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>>

java.lang.Object

bdv.AbstractViewerSetupImgLoader<T,V>

bdv.img.hdf5.Hdf5ImageLoader.SetupImgLoader<T,V>

All Implemented Interfaces:

ViewerSetupImgLoader<T,V>, mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>, mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>, mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>, mpicbg.spim.data.sequence.SetupImgLoader<T>

Enclosing class:

Hdf5ImageLoader

public class Hdf5ImageLoader.SetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>>
extends AbstractViewerSetupImgLoader<T,V>
implements mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>

Field Summary

Fields inherited from class bdv.AbstractViewerSetupImgLoader

type, volatileType

Constructor Summary

Constructors

Constructor	Description
SetupImgLoader(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader, bdv.img.hdf5.HDF5Access hdf5Access, int setupId, DataTypeProperties<T,V,?,?> typeProps, boolean legacyInt16)

Method Summary

Modifier and Type	Method	Description
net.imglib2.RandomAccessibleInterval<T>	getImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.Dimensions	getImageSize(int timepointId, int level)
MipmapInfo	getMipmapInfo()
double[][]	getMipmapResolutions()
net.imglib2.realtransform.AffineTransform3D[]	getMipmapTransforms()
net.imglib2.RandomAccessibleInterval<V>	getVolatileImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
mpicbg.spim.data.sequence.VoxelDimensions	getVoxelSize(int timepointId)
int	numMipmapLevels()

Methods inherited from class bdv.AbstractViewerSetupImgLoader

getImage, getImageType, getVolatileImageType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader

getImage, getImageType

Methods inherited from interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader

getFloatImage, getFloatImage, getImageSize

Constructor Detail

SetupImgLoader

public SetupImgLoader(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader,
                      bdv.img.hdf5.HDF5Access hdf5Access,
                      int setupId,
                      DataTypeProperties<T,V,?,?> typeProps,
                      boolean legacyInt16)

Method Detail

getVolatileImage

public net.imglib2.RandomAccessibleInterval<V> getVolatileImage(int timepointId,
                                                                int level,
                                                                mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getVolatileImage in interface ViewerSetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>>

getImage

public net.imglib2.RandomAccessibleInterval<T> getImage(int timepointId,
                                                        int level,
                                                        mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getImage in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T extends net.imglib2.type.NativeType<T>>

getMipmapInfo

public MipmapInfo getMipmapInfo()

getMipmapResolutions

public double[][] getMipmapResolutions()

Specified by:

getMipmapResolutions in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T extends net.imglib2.type.NativeType<T>>

getMipmapTransforms

public net.imglib2.realtransform.AffineTransform3D[] getMipmapTransforms()

Specified by:

getMipmapTransforms in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T extends net.imglib2.type.NativeType<T>>

numMipmapLevels

public int numMipmapLevels()

Specified by:

numMipmapLevels in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T extends net.imglib2.type.NativeType<T>>

getImageSize

public net.imglib2.Dimensions getImageSize(int timepointId,
                                           int level)

Specified by:

getImageSize in interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T extends net.imglib2.type.NativeType<T>>

getVoxelSize

public mpicbg.spim.data.sequence.VoxelDimensions getVoxelSize(int timepointId)

Specified by:

getVoxelSize in interface mpicbg.spim.data.sequence.SetupImgLoader<T extends net.imglib2.type.NativeType<T>>