Module org.bigdataviewer.core

Package bdv

Class AbstractCachedViewerSetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>,A extends net.imglib2.img.basictypeaccess.volatiles.VolatileAccess & net.imglib2.img.basictypeaccess.DataAccess>

java.lang.Object

bdv.AbstractViewerSetupImgLoader<T,V>

bdv.AbstractCachedViewerSetupImgLoader<T,V,A>

All Implemented Interfaces:

ViewerSetupImgLoader<T,V>, mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>, mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>

public abstract class AbstractCachedViewerSetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>,A extends net.imglib2.img.basictypeaccess.volatiles.VolatileAccess & net.imglib2.img.basictypeaccess.DataAccess>
extends AbstractViewerSetupImgLoader<T,V>

Abstract ViewerSetupImgLoader with a VolatileGlobalCellCache.

Author:

Stephan Saalfeld

Field Summary

Fields

Modifier and Type	Field	Description
protected VolatileGlobalCellCache	cache
protected int[][]	cellDimensions
protected long[][]	dimensions
protected CacheArrayLoader<A>	loader
protected net.imglib2.realtransform.AffineTransform3D[]	mipmapTransforms
protected double[][]	resolutions
protected int	setupId

Fields inherited from class bdv.AbstractViewerSetupImgLoader

type, volatileType

Constructor Summary

Constructors

Constructor	Description
AbstractCachedViewerSetupImgLoader(int setupId, long[][] dimensions, int[][] cellDimensions, double[][] resolutions, T type, V vType, CacheArrayLoader<A> loader, VolatileGlobalCellCache cache)

Method Summary

Modifier and Type	Method	Description
net.imglib2.RandomAccessibleInterval<T>	getImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
double[][]	getMipmapResolutions()
net.imglib2.realtransform.AffineTransform3D[]	getMipmapTransforms()
net.imglib2.RandomAccessibleInterval<V>	getVolatileImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
int	numMipmapLevels()
protected <S extends net.imglib2.type.NativeType<S>> VolatileCachedCellImg<S,A>	prepareCachedImage(int timepointId, int level, net.imglib2.cache.volatiles.LoadingStrategy loadingStrategy, S t)

Methods inherited from class bdv.AbstractViewerSetupImgLoader

getImage, getImageType, getVolatileImageType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dimensions

protected final long[][] dimensions

cellDimensions

protected final int[][] cellDimensions

resolutions

protected final double[][] resolutions

mipmapTransforms

protected final net.imglib2.realtransform.AffineTransform3D[] mipmapTransforms

cache

protected VolatileGlobalCellCache cache

loader

protected final CacheArrayLoader<A extends net.imglib2.img.basictypeaccess.volatiles.VolatileAccess & net.imglib2.img.basictypeaccess.DataAccess> loader

setupId

protected final int setupId

Constructor Detail

AbstractCachedViewerSetupImgLoader

public AbstractCachedViewerSetupImgLoader(int setupId,
                                          long[][] dimensions,
                                          int[][] cellDimensions,
                                          double[][] resolutions,
                                          T type,
                                          V vType,
                                          CacheArrayLoader<A> loader,
                                          VolatileGlobalCellCache cache)

Method Detail

getMipmapResolutions

public double[][] getMipmapResolutions()

numMipmapLevels

public int numMipmapLevels()

prepareCachedImage

protected <S extends net.imglib2.type.NativeType<S>> VolatileCachedCellImg<S,A> prepareCachedImage(int timepointId,
                                                                                                         int level,
                                                                                                         net.imglib2.cache.volatiles.LoadingStrategy loadingStrategy,
                                                                                                         S t)

getImage

public net.imglib2.RandomAccessibleInterval<T> getImage(int timepointId,
                                                        int level,
                                                        mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

getVolatileImage

public net.imglib2.RandomAccessibleInterval<V> getVolatileImage(int timepointId,
                                                                int level,
                                                                mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

getMipmapTransforms

public net.imglib2.realtransform.AffineTransform3D[] getMipmapTransforms()