bdv.img.imaris

Class HDF5AccessHack

java.lang.Object

bdv.img.imaris.HDF5AccessHack

All Implemented Interfaces:

IHDF5Access

public class HDF5AccessHack
extends Object
implements IHDF5Access

Constructor Summary

Constructors

Constructor and Description
HDF5AccessHack(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader)

Method Summary

Modifier and Type	Method and Description
protected void	finalize()
DimsAndExistence	getDimsAndExistence(ViewLevelId id)
byte[]	readByteMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
byte[]	readByteMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, byte[] dataBlock)
float[]	readFloatMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
float[]	readFloatMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, float[] dataBlock)
String	readImarisAttributeString(String objectPath, String attributeName)
String	readImarisAttributeString(String objectPath, String attributeName, String defaultValue)
short[]	readShortMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
short[]	readShortMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, short[] dataBlock)

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HDF5AccessHack

public HDF5AccessHack(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader)
               throws ClassNotFoundException,
                      SecurityException,
                      NoSuchFieldException,
                      IllegalArgumentException,
                      IllegalAccessException

Throws:

ClassNotFoundException

SecurityException

NoSuchFieldException

IllegalArgumentException

IllegalAccessException

Method Detail

getDimsAndExistence

public DimsAndExistence getDimsAndExistence(ViewLevelId id)

Specified by:

getDimsAndExistence in interface IHDF5Access

readByteMDArrayBlockWithOffset

public byte[] readByteMDArrayBlockWithOffset(int timepoint,
                                             int setup,
                                             int level,
                                             int[] dimensions,
                                             long[] min)
                                      throws InterruptedException

Specified by:

readByteMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readByteMDArrayBlockWithOffset

public byte[] readByteMDArrayBlockWithOffset(int timepoint,
                                             int setup,
                                             int level,
                                             int[] dimensions,
                                             long[] min,
                                             byte[] dataBlock)
                                      throws InterruptedException

Specified by:

readByteMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readShortMDArrayBlockWithOffset

public short[] readShortMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min)
                                        throws InterruptedException

Specified by:

readShortMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readShortMDArrayBlockWithOffset

public short[] readShortMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min,
                                               short[] dataBlock)
                                        throws InterruptedException

Specified by:

readShortMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readFloatMDArrayBlockWithOffset

public float[] readFloatMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min)
                                        throws InterruptedException

Specified by:

readFloatMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readFloatMDArrayBlockWithOffset

public float[] readFloatMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min,
                                               float[] dataBlock)
                                        throws InterruptedException

Specified by:

readFloatMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readImarisAttributeString

public String readImarisAttributeString(String objectPath,
                                        String attributeName)

Specified by:

readImarisAttributeString in interface IHDF5Access

readImarisAttributeString

public String readImarisAttributeString(String objectPath,
                                        String attributeName,
                                        String defaultValue)

Specified by:

readImarisAttributeString in interface IHDF5Access

finalize

protected void finalize()
                 throws Throwable

Overrides:

finalize in class Object

Throws:

Throwable