bdv.img.hdf5

Class Hdf5ImageLoader.SetupImgLoader<T extends NativeType<T>,V extends Volatile<T> & NativeType<V>>

java.lang.Object

bdv.AbstractViewerSetupImgLoader<T,V>

bdv.img.hdf5.Hdf5ImageLoader.SetupImgLoader<T,V>

All Implemented Interfaces:

ViewerSetupImgLoader<T,V>, BasicMultiResolutionSetupImgLoader<T>, BasicSetupImgLoader<T>, MultiResolutionSetupImgLoader<T>, SetupImgLoader<T>

Enclosing class:

Hdf5ImageLoader

public class Hdf5ImageLoader.SetupImgLoader<T extends NativeType<T>,V extends Volatile<T> & NativeType<V>>
extends AbstractViewerSetupImgLoader<T,V>
implements MultiResolutionSetupImgLoader<T>

Field Summary

Fields inherited from class bdv.AbstractViewerSetupImgLoader

type, volatileType

Constructor Summary

Constructors

Constructor and Description
SetupImgLoader(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader, bdv.img.hdf5.HDF5Access hdf5Access, int setupId, DataTypeProperties<T,V,?,?> typeProps, boolean legacyInt16)

Method Summary

Modifier and Type	Method and Description
RandomAccessibleInterval<T>	getImage(int timepointId, int level, ImgLoaderHint... hints)
Dimensions	getImageSize(int timepointId, int level)
MipmapInfo	getMipmapInfo()
double[][]	getMipmapResolutions()
AffineTransform3D[]	getMipmapTransforms()
RandomAccessibleInterval<V>	getVolatileImage(int timepointId, int level, ImgLoaderHint... hints)
VoxelDimensions	getVoxelSize(int timepointId)
int	numMipmapLevels()

Methods inherited from class bdv.AbstractViewerSetupImgLoader

getImage, getImageType, getVolatileImageType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader

getFloatImage, getFloatImage, getImageSize

Methods inherited from interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader

getImage, getImageType

Constructor Detail

SetupImgLoader

public SetupImgLoader(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader,
                      bdv.img.hdf5.HDF5Access hdf5Access,
                      int setupId,
                      DataTypeProperties<T,V,?,?> typeProps,
                      boolean legacyInt16)

Method Detail

getVolatileImage

public RandomAccessibleInterval<V> getVolatileImage(int timepointId,
                                                    int level,
                                                    ImgLoaderHint... hints)

Specified by:

getVolatileImage in interface ViewerSetupImgLoader<T extends NativeType<T>,V extends Volatile<T> & NativeType<V>>

getImage

public RandomAccessibleInterval<T> getImage(int timepointId,
                                            int level,
                                            ImgLoaderHint... hints)

Specified by:

getImage in interface BasicMultiResolutionSetupImgLoader<T extends NativeType<T>>

getMipmapInfo

public MipmapInfo getMipmapInfo()

getMipmapResolutions

public double[][] getMipmapResolutions()

Specified by:

getMipmapResolutions in interface BasicMultiResolutionSetupImgLoader<T extends NativeType<T>>

getMipmapTransforms

public AffineTransform3D[] getMipmapTransforms()

Specified by:

getMipmapTransforms in interface BasicMultiResolutionSetupImgLoader<T extends NativeType<T>>

numMipmapLevels

public int numMipmapLevels()

Specified by:

numMipmapLevels in interface BasicMultiResolutionSetupImgLoader<T extends NativeType<T>>

getImageSize

public Dimensions getImageSize(int timepointId,
                               int level)

Specified by:

getImageSize in interface MultiResolutionSetupImgLoader<T extends NativeType<T>>

getVoxelSize

public VoxelDimensions getVoxelSize(int timepointId)

Specified by:

getVoxelSize in interface SetupImgLoader<T extends NativeType<T>>