Serialized Form (VIB-lib 2.2.0 API)

Package amira
- Class amira.AmiraTable extends TextWindow implements Serializable
  - Serialized Fields
    - properties
```
Properties properties
```
    - show
```
boolean show
```
Package features
- Class features.SigmaPalette.PaletteCanvas extends ImageCanvas implements Serializable
  - Serialized Fields
    - owner
```
SigmaPalette owner
```
    - croppedWidth
```
int croppedWidth
```
    - croppedHeight
```
int croppedHeight
```
    - sigmasAcross
```
int sigmasAcross
```
    - sigmasDown
```
int sigmasDown
```
    - backBufferWidth
```
int backBufferWidth
```
    - backBufferHeight
```
int backBufferHeight
```
    - backBufferGraphics
```
Graphics backBufferGraphics
```
    - backBufferImage
```
Image backBufferImage
```
- Class features.SigmaPalette.PaletteStackWindow extends StackWindow implements Serializable
  - Serialized Fields
    - owner
```
SigmaPalette owner
```
    - label
```
Label label
```
    - maxValueScrollbar
```
Scrollbar maxValueScrollbar
```
    - manuallyChangedAlready
```
boolean manuallyChangedAlready
```
Package landmarks
- Class landmarks.NamedPointSet.PointsFileException extends Exception implements Serializable
- Class landmarks.ProgressCanvas extends ImageCanvas implements Serializable
  - Serialized Fields
    - imagePlus
```
ImagePlus imagePlus
```
    - fixed_x
```
int fixed_x
```
    - fixed_y
```
int fixed_y
```
    - fixed_z
```
int fixed_z
```
    - transformed_x
```
int transformed_x
```
    - transformed_y
```
int transformed_y
```
    - transformed_z
```
int transformed_z
```
    - drawFixed
```
boolean drawFixed
```
    - drawTransformed
```
boolean drawTransformed
```
- Class landmarks.ProgressWindow extends StackWindow implements Serializable
  - Serialized Fields
    - width
```
int width
```
    - height
```
int height
```
    - depth
```
int depth
```
    - scoreFormatter
```
DecimalFormat scoreFormatter
```
    - distanceFormatter
```
DecimalFormat distanceFormatter
```
    - plugin
```
NamePoints plugin
```
    - fineTuneThreads
```
ArrayList<E> fineTuneThreads
```
    - useThis
```
Button useThis
```
    - cancel
```
Button cancel
```
    - refineBestSoFar
```
Button refineBestSoFar
```
    - lowestScore
```
Label lowestScore
```
    - triedSoFar
```
Label triedSoFar
```
    - moveToRefinedPoint
```
Button moveToRefinedPoint
```
    - moveToOriginalPoint
```
Button moveToOriginalPoint
```
    - distanceMoved
```
Label distanceMoved
```
    - bestSoFar
```
RegistrationResult bestSoFar
```
    - useTheResult
```
boolean useTheResult
```
    - progressCanvas
```
ProgressCanvas progressCanvas
```
    - notShowingBest
```
boolean notShowingBest
```
    - timeLastProgressUpdate
```
long timeLastProgressUpdate
```

Package stacks

Class stacks.ThreePaneContainer extends StackWindow implements Serializable

Serialized Fields

original_xy_canvas
```
ThreePanesCanvas original_xy_canvas
```
xy
```
ImagePlus xy
```
xz
```
ImagePlus xz
```
zy
```
ImagePlus zy
```
xy_canvas
```
ThreePanesCanvas xy_canvas
```
xz_canvas
```
ThreePanesCanvas xz_canvas
```
zy_canvas
```
ThreePanesCanvas zy_canvas
```

Class stacks.ThreePaneCropCanvas extends ThreePanesCanvas implements Serializable

Serialized Fields

crop_min_offscreen_x
```
int crop_min_offscreen_x
```
crop_max_offscreen_x
```
int crop_max_offscreen_x
```
crop_min_offscreen_y
```
int crop_min_offscreen_y
```
crop_max_offscreen_y
```
int crop_max_offscreen_y
```
offscreen_width
```
int offscreen_width
```
offscreen_height
```
int offscreen_height
```
dragging
```
int dragging
```
x_pressed_at
```
int x_pressed_at
```
y_pressed_at
```
int y_pressed_at
```
offset_x_in_handle
```
int offset_x_in_handle
```
offset_y_in_handle
```
int offset_y_in_handle
```
nw
```
stacks.CropHandleRectangle nw
```
ne
```
stacks.CropHandleRectangle ne
```
sw
```
stacks.CropHandleRectangle sw
```
se
```
stacks.CropHandleRectangle se
```
backBufferWidth
```
int backBufferWidth
```
backBufferHeight
```
int backBufferHeight
```
backBufferGraphics
```
Graphics backBufferGraphics
```
backBufferImage
```
Image backBufferImage
```

Class stacks.ThreePanesCanvas extends ImageCanvas implements Serializable
- Serialized Fields
  - owner
```
PaneOwner owner
```
  - plane
```
int plane
```
  - current_x
```
double current_x
```
  - current_y
```
double current_y
```
  - current_z
```
double current_z
```
  - draw_crosshairs
```
boolean draw_crosshairs
```

Package util
- Class util.BatchOpener.ImageLoaderException extends Exception implements Serializable
- Class util.BatchOpener.NoSuchChannelException extends Exception implements Serializable
- Class util.ModelessQuestions extends Dialog implements Serializable
  - Serialized Fields
    - components
```
ArrayList<E> components
```
    - imagePlus
```
ImagePlus imagePlus
```
    - checkboxGroups
```
Hashtable<K,V> checkboxGroups
```
    - completingButtons
```
ArrayList<E> completingButtons
```
    - buttonPressed
```
int buttonPressed
```

Package vib

Class vib.SegmentationViewerCanvas extends ImageCanvas implements Serializable

Serialized Fields

mode
```
int mode
```
alpha
```
int alpha
```
labels
```
ImagePlus labels
```
w
```
int w
```
h
```
int h
```
d
```
int d
```
label_colors
```
Color[] label_colors
```
contours
```
Vector<E>[] contours
```
colors
```
Vector<E>[] colors
```
indices
```
Vector<E>[] indices
```
debug
```
boolean debug
```
backBufferWidth
```
int backBufferWidth
```
backBufferHeight
```
int backBufferHeight
```
backBufferGraphics
```
Graphics backBufferGraphics
```
backBufferImage
```
Image backBufferImage
```

Class vib.ShowHistogram extends ImageWindow implements Serializable

Serialized Fields

histogram
```
double[] histogram
```
histMin
```
double histMin
```
binSize
```
double binSize
```
frame
```
Rectangle frame
```
list
```
Button list
```
save
```
Button save
```
copy
```
Button copy
```
log
```
Button log
```
value
```
Label value
```
count
```
Label count
```
decimalPlaces
```
int decimalPlaces
```
digits
```
int digits
```
newMinCount
```
int newMinCount
```
newMaxCount
```
int newMaxCount
```
plotScale
```
int plotScale
```
logScale
```
boolean logScale
```
yMax
```
int yMax
```

Package vib.app
- Class vib.app.FileGroup extends ArrayList<File> implements Serializable
  - Serialized Fields
    - name
```
String name
```
Package vib.app.gui
- Class vib.app.gui.FileGroupDialog extends Panel implements Serializable
  - Serialized Fields
    - files
```
FileGroup files
```
    - showWholePath
```
boolean showWholePath
```
    - list
```
List list
```
    - nameTF
```
TextField nameTF
```
    - add
```
Button add
```
    - delete
```
Button delete
```
    - template
```
Button template
```
    - wholePath
```
Checkbox wholePath
```
    - showTemplateButton
```
boolean showTemplateButton
```

Package vib.segment

Class vib.segment.CustomCanvas extends SegmentationViewerCanvas implements Serializable
- Serialized Fields
  - listener
```
Vector<E> listener
```
Class vib.segment.CustomStackWindow extends StackWindow implements Serializable
- Serialized Fields
  - savedRois
```
Roi[] savedRois
```
  - oldSlice
```
int oldSlice
```
  - roisLocked
```
boolean roisLocked
```
  - al
```
ActionListener al
```
  - sidebar
```
Sidebar sidebar
```
  - cc
```
CustomCanvas cc
```
  - ok
```
Button ok
```
Class vib.segment.ImageButton extends Canvas implements Serializable
- Serialized Fields
  - tracker
```
MediaTracker tracker
```
  - images
```
Image[] images
```
  - borders
```
Border[] borders
```
  - generatedDisabled
```
boolean generatedDisabled
```
  - mousedown
```
boolean mousedown
```
  - buttonState
```
int buttonState
```
  - command
```
String command
```
  - borderColor
```
Color borderColor
```
  - actionListeners
```
Vector<E> actionListeners
```
Class vib.segment.InfoPanel extends Panel implements Serializable
- Serialized Fields
  - lPosX
```
Label lPosX
```
  - lPosY
```
Label lPosY
```
  - lPosZ
```
Label lPosZ
```
  - lIndexX
```
Label lIndexX
```
  - lIndexY
```
Label lIndexY
```
  - lIndexZ
```
Label lIndexZ
```
  - lMaterialName
```
Label lMaterialName
```
  - lVoxelValueNum
```
Label lVoxelValueNum
```
  - font
```
Font font
```

Class vib.segment.MaterialList extends ScrollPane implements Serializable

Serialized Fields

popup
```
PopupMenu popup
```
labels
```
ImagePlus labels
```
params
```
AmiraParameters params
```
cc
```
CustomCanvas cc
```
font
```
Font font
```
lineHeight
```
int lineHeight
```
lineWidth
```
int lineWidth
```
list
```
vib.segment.MaterialList.List list
```
locked
```
boolean[] locked
```
remove
```
MenuItem remove
```
add
```
MenuItem add
```
rename
```
MenuItem rename
```
color
```
MenuItem color
```
lock
```
CheckboxMenuItem lock
```

Class vib.segment.Sidebar extends Panel implements Serializable

Serialized Fields

cc
```
CustomCanvas cc
```
font
```
Font font
```
constr
```
GridBagConstraints constr
```
lZoomLevel
```
Label lZoomLevel
```
bZoomPlus
```
ImageButton bZoomPlus
```
bZoomMinus
```
ImageButton bZoomMinus
```
bPlus
```
ImageButton bPlus
```
bMinus
```
ImageButton bMinus
```
bInterpolate
```
ImageButton bInterpolate
```
bThreshold
```
ImageButton bThreshold
```
bOpen
```
ImageButton bOpen
```
bClose
```
ImageButton bClose
```
check3d
```
Checkbox check3d
```
labelImagesChoice
```
Choice labelImagesChoice
```
labelImages
```
Vector<E> labelImages
```
al
```
ActionListener al
```
materials
```
MaterialList materials
```
defaultMaterials
```
Vector<E> defaultMaterials
```
currentLabelsAreNew
```
boolean currentLabelsAreNew
```

Serialized Form

Package amira

Class amira.AmiraTable extends TextWindow implements Serializable

Serialized Fields

properties

show

Package features

Class features.SigmaPalette.PaletteCanvas extends ImageCanvas implements Serializable

Serialized Fields

owner

croppedWidth

croppedHeight

sigmasAcross

sigmasDown

backBufferWidth

backBufferHeight

backBufferGraphics

backBufferImage

Class features.SigmaPalette.PaletteStackWindow extends StackWindow implements Serializable

Serialized Fields

owner

label

maxValueScrollbar

manuallyChangedAlready

Package landmarks

Class landmarks.NamedPointSet.PointsFileException extends Exception implements Serializable

Class landmarks.ProgressCanvas extends ImageCanvas implements Serializable

Serialized Fields

imagePlus

fixed_x

fixed_y

fixed_z

transformed_x

transformed_y

transformed_z

drawFixed

drawTransformed

Class landmarks.ProgressWindow extends StackWindow implements Serializable

Serialized Fields

width

height

depth

scoreFormatter

distanceFormatter

plugin

fineTuneThreads

useThis

cancel

refineBestSoFar

lowestScore

triedSoFar

moveToRefinedPoint

moveToOriginalPoint

distanceMoved

bestSoFar

useTheResult

progressCanvas

notShowingBest

timeLastProgressUpdate

Package stacks

Class stacks.ThreePaneContainer extends StackWindow implements Serializable

Serialized Fields

original_xy_canvas

xy

xz

zy

xy_canvas

xz_canvas

zy_canvas

Class stacks.ThreePaneCropCanvas extends ThreePanesCanvas implements Serializable

Serialized Fields

crop_min_offscreen_x

crop_max_offscreen_x

crop_min_offscreen_y

crop_max_offscreen_y

offscreen_width

offscreen_height

dragging

x_pressed_at

y_pressed_at