Uses of Class
sc.fiji.filamentdetector.model.Filament

Packages that use Filament

Package	Description
sc.fiji.filamentdetector.event
sc.fiji.filamentdetector.gui.controller
sc.fiji.filamentdetector.gui.model
sc.fiji.filamentdetector.gui.view
sc.fiji.filamentdetector.model
sc.fiji.filamentdetector.overlay
sc.fiji.filamentdetector.tracking.lap

Uses of Filament in sc.fiji.filamentdetector.event

Methods in sc.fiji.filamentdetector.event that return Filament

Modifier and Type	Method	Description
Filament	FilamentSelectedEvent.getFilament()

Constructors in sc.fiji.filamentdetector.event with parameters of type Filament

Constructor	Description
FilamentSelectedEvent(Filament filament)

Uses of Filament in sc.fiji.filamentdetector.gui.controller

Methods in sc.fiji.filamentdetector.gui.controller that return Filament

Modifier and Type	Method	Description
Filament	DetailedFilamentController.getFilament()

Constructors in sc.fiji.filamentdetector.gui.controller with parameters of type Filament

Constructor	Description
DetailedFilamentController(Filament filament)

Uses of Filament in sc.fiji.filamentdetector.gui.model

Methods in sc.fiji.filamentdetector.gui.model that return Filament

Modifier and Type	Method	Description
Filament	FilamentModel.getFilament()

Constructors in sc.fiji.filamentdetector.gui.model with parameters of type Filament

Constructor	Description
FilamentModel(Filament filament)

Uses of Filament in sc.fiji.filamentdetector.gui.view

Methods in sc.fiji.filamentdetector.gui.view with parameters of type Filament

Modifier and Type	Method	Description
void	FilamentsTableView.addFilament(Filament filament)

Uses of Filament in sc.fiji.filamentdetector.model

Fields in sc.fiji.filamentdetector.model with type parameters of type Filament

Modifier and Type	Field	Description
static Comparator<Filament>	Filament.frameComparator

Methods in sc.fiji.filamentdetector.model that return Filament

Modifier and Type	Method	Description
Filament	Filament.copy()
static Filament	FilamentFactory.fromLine(de.biomedical_imaging.ij.steger.Line line, int frame)
static Filament	FilamentFactory.fromPolyline(net.imglib2.roi.geom.real.Polyline line, int frame)
Filament	TrackedFilament.getFilamentByFrame(double frame)
Filament	Filament.simplify(double toleranceDistance)

Methods in sc.fiji.filamentdetector.model with parameters of type Filament

Modifier and Type	Method	Description
boolean	Filaments.add(Filament filament)
TrackedFilament	TrackedFilaments.addLink(Filament source, Filament target)
int	Filament.compareTo(Filament filament)
boolean	TrackedFilaments.contains(Filament filament)
double	Filament.distanceFromCenter(Filament filament)
TrackedFilament	TrackedFilaments.getTrackedFilament(Filament filament)
boolean	TrackedFilament.lastFilamentIs(Filament filament)

Method parameters in sc.fiji.filamentdetector.model with type arguments of type Filament

Modifier and Type	Method	Description
void	TrackedFilaments.buildTracks(org.jgrapht.graph.SimpleWeightedGraph<Filament,org.jgrapht.graph.DefaultWeightedEdge> graph)

Uses of Filament in sc.fiji.filamentdetector.overlay

Methods in sc.fiji.filamentdetector.overlay with parameters of type Filament

Modifier and Type	Method	Description
void	DefaultFilamentOverlayService.add(Filament filament)
void	FilamentOverlayService.add(Filament filament)
void	DefaultFilamentOverlayService.remove(Filament filament)
void	FilamentOverlayService.remove(Filament filament)
void	DefaultFilamentOverlayService.setSelected(Filament filament, boolean moveToFrame, boolean clearSelection)
void	FilamentOverlayService.setSelected(Filament filament, boolean moveToFrame, boolean clearSelection)

Uses of Filament in sc.fiji.filamentdetector.tracking.lap

Methods in sc.fiji.filamentdetector.tracking.lap that return types with arguments of type Filament

Modifier and Type	Method	Description
protected fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<Filament,Filament>	JaqamanFilamentSegmentCostMatrixCreator.getCostFunctionFor(Map<String,Double> featurePenalties)
protected fiji.plugin.trackmate.tracking.jaqaman.costfunction.CostFunction<Filament,Filament>	JaqamanFilamentSegmentCostMatrixCreator.getCostFunctionFor(Map<String,Double> featurePenalties)
List<Filament>	FilamentGraphSegmentSplitter.getSegmentEnds()
List<List<Filament>>	FilamentGraphSegmentSplitter.getSegmentMiddles()
List<Filament>	FilamentGraphSegmentSplitter.getSegmentStarts()
List<Filament>	JaqamanFilamentSegmentCostMatrixCreator.getSourceList()
List<Filament>	JaqamanFilamentSegmentCostMatrixCreator.getTargetList()

Methods in sc.fiji.filamentdetector.tracking.lap with parameters of type Filament

Modifier and Type	Method	Description
double	JaqamanFilamentSegmentCostMatrixCreator.getAlternativeCostForSource(Filament source)
double	JaqamanFilamentSegmentCostMatrixCreator.getAlternativeCostForTarget(Filament target)
double	BoundingBoxOverlapCostFunction.linkingCost(Filament source, Filament target)

Constructor parameters in sc.fiji.filamentdetector.tracking.lap with type arguments of type Filament

Constructor	Description
FilamentGraphSegmentSplitter(org.jgrapht.Graph<Filament,org.jgrapht.graph.DefaultWeightedEdge> graph, boolean findMiddlePoints)
JaqamanFilamentSegmentCostMatrixCreator(org.jgrapht.Graph<Filament,org.jgrapht.graph.DefaultWeightedEdge> graph, Map<String,Object> settings)	Instantiates a cost matrix creator for the top-left quadrant of the segment linking cost matrix.