Package loci.formats

Class ChannelMerger

java.lang.Object
loci.formats.ReaderWrapper
loci.formats.ChannelMerger
All Implemented Interfaces:
Closeable, AutoCloseable, loci.formats.ICompressedTileReader, loci.formats.IFormatHandler, loci.formats.IFormatReader, loci.formats.IMetadataConfigurable, loci.formats.IPyramidHandler
public class ChannelMerger extends loci.formats.ReaderWrapper
Logic to automatically merge channels in a file.

  • Field Summary

    Fields inherited from class loci.formats.ReaderWrapper

    reader

    Fields inherited from interface loci.formats.IFormatReader

    CAN_GROUP, CANNOT_GROUP, MUST_GROUP

  • Constructor Summary

    Constructors
    Constructor
    Description
    ChannelMerger()
    Constructs a ChannelMerger around a new image reader.
    ChannelMerger(loci.formats.IFormatReader r)
    Constructs a ChannelMerger with the given reader.

  • Method Summary

    Modifier and Type
    Method
    Description
    boolean
    canMerge()
    Determines whether the channels in the file can be merged.
    String
    getDimensionOrder()
     
    int
    getImageCount()
     
    int
    getIndex(int z, int c, int t)
     
    int
    getIndex(int z, int c, int t, int moduloZ, int moduloC, int moduloT)
     
    Class<?>
    getNativeDataType()
     
    int
    getOriginalIndex(int no)
    Returns the image number in the original dataset that corresponds to the given image number.
    loci.formats.codec.Codec
    getTileCodec(int no)
     
    loci.formats.codec.CodecOptions
    getTileCodecOptions(int no, int x, int y)
     
    int[]
    getZCTCoords(int index)
     
    int[]
    getZCTModuloCoords(int index)
     
    boolean
    isIndexed()
     
    boolean
    isInterleaved()
     
    boolean
    isRGB()
     
    static ChannelMerger
    makeChannelMerger(loci.formats.IFormatReader r)
    Converts the given reader into a ChannelMerger, wrapping if needed.
    byte[]
    openBytes(int no)
     
    byte[]
    openBytes(int no, byte[] buf)
     
    byte[]
    openBytes(int no, byte[] buf, int x, int y, int w, int h)
     
    byte[]
    openBytes(int no, int x, int y, int w, int h)
     
    byte[]
    openCompressedBytes(int no, byte[] buf, int x, int y)
     
    byte[]
    openCompressedBytes(int no, int x, int y)
     
    void
    setId(String id)
     

    Methods inherited from class loci.formats.ReaderWrapper

    close, close, coreIndexToSeries, duplicate, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getBitsPerPixel, getCoreIndex, getCoreMetadataList, getCurrentFile, getDatasetStructureDescription, getDomains, getEffectiveSizeC, getFillColor, getFormat, getGlobalMetadata, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getModuloC, getModuloT, getModuloZ, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPossibleDomains, getReader, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getSeries, getSeriesCount, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSuffixes, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isSingleFile, isThisType, isThisType, isThisType, isThisType, isThumbnailSeries, openPlane, openThumbBytes, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, unwrap, unwrap, unwrap

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait