Package loci.formats

package loci.formats
  • Class
    Description
    AxisGuesser
    AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T, C or S), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.
    ChannelFiller
    For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.
    ChannelMerger
    Logic to automatically merge channels in a file.
    ChannelSeparator
    Logic to automatically separate the channels in a file.
    DimensionSwapper
    Handles swapping the dimension order of an image series.
    FilePattern
    Represents a collection of files meant to be part of the same data series.
    FilePatternBlock
    FilePatternBlock represents a single block in a FilePattern.
    FileStitcher
    Logic to stitch together files with similar names.
    IllegalBlockException
    Exception thrown when FilePatternBlock encounters an invalid pattern.
    ImageTools
    A utility class with convenience methods for manipulating images in primitive array form.
    Memoizer
    ReaderWrapper implementation which caches the state of the delegate (including and other ReaderWrapper instances) after Memoizer.setId(String) has been called.
    Memoizer.Deser
     
    Memoizer.KryoDeser
     
    MinMaxCalculator
    Logic to compute minimum and maximum values for each channel.
    NumberFilter
    NumberFilter is a helper filter for FilePattern.findPattern().
    ResourceNamer
    Utility class helping with generating human-readable resource names based on alphanumeric indexing.
    SwappableMetadata
    Extends CoreMetadata to include the notion of an "input order" for planes: the input order being the order planes are stored on disk.
    UpgradeChecker
    Class that allows checking for new versions of Bio-Formats, as well as updating to the latest stable, daily, or trunk version.