Package net.preibisch.mvrecon.process.fusion.transformed.nonrigid

Class InterpolatingNonRigidRandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

java.lang.Object

net.imglib2.AbstractEuclideanSpace

net.imglib2.AbstractLocalizableInt

net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedIntervalRandomAccess

net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedImgRandomAccess<T>

net.preibisch.mvrecon.process.fusion.transformed.nonrigid.InterpolatingNonRigidRandomAccess<T>

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.Localizable, net.imglib2.Positionable, net.imglib2.RandomAccess<net.imglib2.type.numeric.real.FloatType>, net.imglib2.RealLocalizable, net.imglib2.Sampler<net.imglib2.type.numeric.real.FloatType>, net.imglib2.Typed<net.imglib2.type.numeric.real.FloatType>

public class InterpolatingNonRigidRandomAccess<T extends net.imglib2.type.numeric.RealType<T>>
extends AbstractTransformedImgRandomAccess<T>

Virtually transforms any RandomAccessibleInterval<RealType> into a RandomAccess<FloatType> using an AffineTransformation and Linear Interpolation. It will only interpolate from the actual data (no outofbounds) to avoid artifacts at the edges and return 0 outside by default (can be changed).

Author:

preibisch

Field Summary

Fields inherited from class net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedImgRandomAccess

hasMinValue, img, ir, minValue

Fields inherited from class net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedIntervalRandomAccess

imgMaxX, imgMaxY, imgMaxZ, imgMinX, imgMinY, imgMinZ, interpolatorFactory, interval, offsetX, offsetY, offsetZ, outside, v

Fields inherited from class net.imglib2.AbstractLocalizableInt

position

Fields inherited from class net.imglib2.AbstractEuclideanSpace

n

Constructor Summary

Constructors

Constructor

Description

InterpolatingNonRigidRandomAccess(net.imglib2.RandomAccessibleInterval<T> img, ModelGrid grid, mpicbg.models.AffineModel3D invertedModelOpener, net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory, boolean hasMinValue, float minValue, net.imglib2.type.numeric.real.FloatType outside, long[] offset)

Method Summary

Modifier and Type	Method	Description
InterpolatingNonRigidRandomAccess<T>	copy()
InterpolatingNonRigidRandomAccess<T>	copyRandomAccess()
net.imglib2.type.numeric.real.FloatType	get()

Methods inherited from class net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedImgRandomAccess

getInsideValue

Methods inherited from class net.preibisch.mvrecon.process.fusion.transformed.AbstractTransformedIntervalRandomAccess

bck, fwd, intersectsLinearInterpolation, move, move, move, move, move, setPosition, setPosition, setPosition, setPosition, setPosition

Methods inherited from class net.imglib2.AbstractLocalizableInt

getDoublePosition, getFloatPosition, getIntPosition, getLongPosition, localize, localize, localize, localize

Methods inherited from class net.imglib2.AbstractEuclideanSpace

numDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Methods inherited from interface net.imglib2.Localizable

getDoublePosition, getFloatPosition, getIntPosition, getLongPosition, localize, localize, localize, localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RandomAccess

setPositionAndGet, setPositionAndGet, setPositionAndGet

Methods inherited from interface net.imglib2.RealLocalizable

localize, localize, positionAsDoubleArray, positionAsRealPoint

Methods inherited from interface net.imglib2.Sampler

getType

Constructor Details

InterpolatingNonRigidRandomAccess

public InterpolatingNonRigidRandomAccess(net.imglib2.RandomAccessibleInterval<T> img,
 ModelGrid grid,
 mpicbg.models.AffineModel3D invertedModelOpener,
 net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory,
 boolean hasMinValue,
 float minValue,
 net.imglib2.type.numeric.real.FloatType outside,
 long[] offset)

Method Details

get

public net.imglib2.type.numeric.real.FloatType get()

copy

public InterpolatingNonRigidRandomAccess<T> copy()

copyRandomAccess

public InterpolatingNonRigidRandomAccess<T> copyRandomAccess()