Package net.preibisch.mvrecon.fiji.spimdata.imgloaders

Class AbstractImgLoader

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.AbstractImgLoader

All Implemented Interfaces:

mpicbg.spim.data.legacy.LegacyBasicImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>, mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

Direct Known Subclasses:

AbstractImgFactoryImgLoader, LegacyDHMImgLoader, LegacyMicroManagerImgLoader

public abstract class AbstractImgLoader
extends Object
implements mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractImgLoader()

Method Summary

Modifier and Type	Method	Description
net.imglib2.Dimensions	getImageSize(mpicbg.spim.data.sequence.ViewId view)
net.imglib2.type.numeric.integer.UnsignedShortType	getImageType()
mpicbg.spim.data.sequence.VoxelDimensions	getVoxelSize(mpicbg.spim.data.sequence.ViewId view)
protected abstract void	loadMetaData(mpicbg.spim.data.sequence.ViewId view)	Loads only the metadata from the image, should call updateMetaDataCache( ... )
protected void	updateMetaDataCache(mpicbg.spim.data.sequence.ViewId viewId, int w, int h, int d, double calX, double calY, double calZ)
void	updateXMLMetaData(List<? extends mpicbg.spim.data.sequence.ViewSetup> setups, boolean forceUpdate)	Updates a list of ViewSetups using the imageMetaDataCache
boolean	updateXMLMetaData(mpicbg.spim.data.sequence.ViewSetup setup, boolean forceUpdate)	Updates one specific ViewSetup using the imageMetaDataCache
void	updateXMLMetaData(mpicbg.spim.data.SpimData data, boolean forceUpdate)	Updates the ViewSetups using the imageMetaDataCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mpicbg.spim.data.legacy.LegacyBasicImgLoader

getImage

Methods inherited from interface mpicbg.spim.data.legacy.LegacyImgLoader

getFloatImage

Constructor Details

AbstractImgLoader

protected AbstractImgLoader()

Method Details

updateMetaDataCache

protected void updateMetaDataCache(mpicbg.spim.data.sequence.ViewId viewId,
 int w,
 int h,
 int d,
 double calX,
 double calY,
 double calZ)

loadMetaData

protected abstract void loadMetaData(mpicbg.spim.data.sequence.ViewId view)

Loads only the metadata from the image, should call updateMetaDataCache( ... )

Parameters:

view - - the view to load metadata for

getImageSize

public net.imglib2.Dimensions getImageSize(mpicbg.spim.data.sequence.ViewId view)

Specified by:

getImageSize in interface mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

getVoxelSize

public mpicbg.spim.data.sequence.VoxelDimensions getVoxelSize(mpicbg.spim.data.sequence.ViewId view)

Specified by:

getVoxelSize in interface mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

getImageType

public net.imglib2.type.numeric.integer.UnsignedShortType getImageType()

Specified by:

getImageType in interface mpicbg.spim.data.legacy.LegacyBasicImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

updateXMLMetaData

public void updateXMLMetaData(mpicbg.spim.data.SpimData data,
 boolean forceUpdate)

Updates the ViewSetups using the imageMetaDataCache

Parameters:

data - - the SpimData object that contains all ViewSetups can could be potentially updated

forceUpdate - - overwrite the data if it is already present

updateXMLMetaData

public void updateXMLMetaData(List<? extends mpicbg.spim.data.sequence.ViewSetup> setups,
 boolean forceUpdate)

Updates a list of ViewSetups using the imageMetaDataCache

Parameters:

setups - - a list of ViewSetups can could be potentially updated

forceUpdate - - overwrite the data if it is already present

updateXMLMetaData

public boolean updateXMLMetaData(mpicbg.spim.data.sequence.ViewSetup setup,
 boolean forceUpdate)

Updates one specific ViewSetup using the imageMetaDataCache

Parameters:

setup - - ViewSetups that can potentially be updated if it is in the cache

forceUpdate - - overwrite the data if it is already present

Returns:

true if something was updated, false if it was not in the cache or if could have been updated but was already there