Package net.preibisch.mvrecon.fiji.spimdata.imgloaders

Class LegacyMicroManagerImgLoader

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.AbstractImgLoader

net.preibisch.mvrecon.fiji.spimdata.imgloaders.LegacyMicroManagerImgLoader

All Implemented Interfaces:

mpicbg.spim.data.legacy.LegacyBasicImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>, mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

public class LegacyMicroManagerImgLoader
extends AbstractImgLoader

Constructor Summary

Constructors

Constructor	Description
LegacyMicroManagerImgLoader(File mmFile, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)

Method Summary

Modifier and Type	Method	Description
static boolean	fitsIntoArrayImg(long w, long h, long d)
File	getFile()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getFloatImage(mpicbg.spim.data.sequence.ViewId view, boolean normalize)
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType>	getImage(mpicbg.spim.data.sequence.ViewId view)
protected void	loadMetaData(mpicbg.spim.data.sequence.ViewId view)	Loads only the metadata from the image, should call updateMetaDataCache( ... )
static final <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> void	populateImage(net.imglib2.img.Img<T> img, mpicbg.spim.data.generic.sequence.BasicViewDescription<?> vd, MultipageTiffReader r)
String	toString()

Methods inherited from class net.preibisch.mvrecon.fiji.spimdata.imgloaders.AbstractImgLoader

getImageSize, getImageType, getVoxelSize, updateMetaDataCache, updateXMLMetaData, updateXMLMetaData, updateXMLMetaData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

LegacyMicroManagerImgLoader

public LegacyMicroManagerImgLoader(File mmFile,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)

Method Details

getFile

public File getFile()

populateImage

public static final <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
void populateImage(net.imglib2.img.Img<T> img,
 mpicbg.spim.data.generic.sequence.BasicViewDescription<?> vd,
 MultipageTiffReader r)

getFloatImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getFloatImage(mpicbg.spim.data.sequence.ViewId view,
 boolean normalize)

getImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType> getImage(mpicbg.spim.data.sequence.ViewId view)

loadMetaData

protected void loadMetaData(mpicbg.spim.data.sequence.ViewId view)

Description copied from class: AbstractImgLoader

Loads only the metadata from the image, should call updateMetaDataCache( ... )

Specified by:

loadMetaData in class AbstractImgLoader

Parameters:

view - - the view to load metadata for

fitsIntoArrayImg

public static boolean fitsIntoArrayImg(long w,
 long h,
 long d)

toString

public String toString()

Overrides:

toString in class Object