Package net.preibisch.mvrecon.fiji.spimdata.imgloaders

Class LegacyDHMImgLoader

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.AbstractImgLoader

net.preibisch.mvrecon.fiji.spimdata.imgloaders.LegacyDHMImgLoader

All Implemented Interfaces:

mpicbg.spim.data.legacy.LegacyBasicImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>, mpicbg.spim.data.legacy.LegacyImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

public class LegacyDHMImgLoader
extends AbstractImgLoader

Constructor Summary

Constructors

Constructor	Description
LegacyDHMImgLoader(File directory, String stackDir, String amplitudeDir, String phaseDir, List<String> timepoints, List<String> zPlanes, String extension, int ampChannelId, int phaseChannelId, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sd)

Method Summary

Modifier and Type	Method	Description
int	getAmpChannelId()
String	getAmplitudeDir()
String	getExt()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getFloatImage(mpicbg.spim.data.sequence.ViewId view, boolean normalize)
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType>	getImage(mpicbg.spim.data.sequence.ViewId view)
int	getPhaseChannelId()
String	getPhaseDir()
String	getStackDir()
List<String>	getTimepoints()
List<String>	getZPlanes()
protected void	loadMetaData(mpicbg.spim.data.sequence.ViewId view)	Loads only the metadata from the image, should call updateMetaDataCache( ... )
static final <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> void	populateImage(net.imglib2.img.array.ArrayImg<T,?> img, File directory, String stackDir, String ampOrPhaseDirectory, List<String> zPlanes, String timepoint, String extension)

Methods inherited from class net.preibisch.mvrecon.fiji.spimdata.imgloaders.AbstractImgLoader

getImageSize, getImageType, getVoxelSize, updateMetaDataCache, updateXMLMetaData, updateXMLMetaData, updateXMLMetaData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LegacyDHMImgLoader

public LegacyDHMImgLoader(File directory,
 String stackDir,
 String amplitudeDir,
 String phaseDir,
 List<String> timepoints,
 List<String> zPlanes,
 String extension,
 int ampChannelId,
 int phaseChannelId,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sd)

Method Details

getStackDir

public String getStackDir()

getAmplitudeDir

public String getAmplitudeDir()

getPhaseDir

public String getPhaseDir()

getZPlanes

public List<String> getZPlanes()

getTimepoints

public List<String> getTimepoints()

getAmpChannelId

public int getAmpChannelId()

getPhaseChannelId

public int getPhaseChannelId()

getExt

public String getExt()

getFloatImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getFloatImage(mpicbg.spim.data.sequence.ViewId view,
 boolean normalize)

getImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType> getImage(mpicbg.spim.data.sequence.ViewId view)

loadMetaData

protected void loadMetaData(mpicbg.spim.data.sequence.ViewId view)

Description copied from class: AbstractImgLoader

Loads only the metadata from the image, should call updateMetaDataCache( ... )

Specified by:

loadMetaData in class AbstractImgLoader

Parameters:

view - - the view to load metadata for

populateImage

public static final <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
void populateImage(net.imglib2.img.array.ArrayImg<T,?> img,
 File directory,
 String stackDir,
 String ampOrPhaseDirectory,
 List<String> zPlanes,
 String timepoint,
 String extension)