net.imglib2.roi.labeling

Class LabelRegion<T>

java.lang.Object

net.imglib2.AbstractEuclideanSpace

net.imglib2.AbstractLocalizable

net.imglib2.roi.labeling.LabelRegion<T>

Type Parameters:

T - the label type

All Implemented Interfaces:

Iterable<Void>, Dimensions, EuclideanSpace, Interval, IterableInterval<Void>, IterableRealInterval<Void>, Localizable, Positionable, RandomAccessible<BoolType>, RandomAccessibleInterval<BoolType>, RealInterval, RealLocalizable, IterableRegion<BoolType>, PositionableIterableRegion<BoolType>

public class LabelRegion<T>
extends AbstractLocalizable
implements PositionableIterableRegion<BoolType>

Present pixels of a given label in a Labeling as a PositionableIterableRegion. The interval bounds represent the bounding box of all pixels having the label. If a RandomAccess is requested for an interval not fully contained in the bounding box, an OutOfBounds access is created with the value false for pixels outside the bounding box.

Author:

Tobias Pietzsch

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	LabelRegion.Origin

Field Summary

Fields inherited from class net.imglib2.AbstractLocalizable

position

Fields inherited from class net.imglib2.AbstractEuclideanSpace

n

Constructor Summary

Constructors

Constructor and Description
LabelRegion(LabelRegions<T> regions, net.imglib2.roi.labeling.LabelRegions.LabelRegionProperties regionProperties, T label)

Method Summary

Modifier and Type	Method and Description
void	bck(int d)
LabelRegion<T>	copy() Create a copy of this LabelRegion.
LabelRegionCursor	cursor()
long	dimension(int d)
void	dimensions(long[] dimensions)
Void	firstElement()
void	fwd(int d)
RealLocalizable	getCenterOfMass()
T	getLabel()
Object	iterationOrder()
LabelRegionCursor	iterator()
LabelRegionCursor	localizingCursor()
long	max(int d)
void	max(long[] max)
void	max(Positionable max)
long	min(int d)
void	min(long[] min)
void	min(Positionable min)
void	move(int[] distance)
void	move(int distance, int d)
void	move(Localizable localizable)
void	move(long[] distance)
void	move(long distance, int d)
LabelRegion.Origin	origin()
LabelRegionRandomAccess<T>	randomAccess()
RandomAccess<BoolType>	randomAccess(Interval interval)
void	realMax(double[] max)
double	realMax(int d)
void	realMax(RealPositionable max)
void	realMin(double[] min)
double	realMin(int d)
void	realMin(RealPositionable min)
void	setPosition(int[] pos)
void	setPosition(int pos, int d)
void	setPosition(Localizable localizable)
void	setPosition(long[] pos)
void	setPosition(long pos, int d)
long	size()

Methods inherited from class net.imglib2.AbstractLocalizable

getDoublePosition, getFloatPosition, getIntPosition, getLongPosition, localize, localize, localize, localize

Methods inherited from class net.imglib2.AbstractEuclideanSpace

numDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Methods inherited from interface net.imglib2.Localizable

getIntPosition, getLongPosition, localize, localize

Methods inherited from interface net.imglib2.RealLocalizable

getDoublePosition, getFloatPosition, localize, localize

Constructor Detail

LabelRegion

public LabelRegion(LabelRegions<T> regions,
                   net.imglib2.roi.labeling.LabelRegions.LabelRegionProperties regionProperties,
                   T label)

Method Detail

copy

public LabelRegion<T> copy()

Create a copy of this LabelRegion. The copy can be independently positioned and its origin can be independently changed. All copies are linked to the original Labeling and reflect all changes.

Returns:

an independent copy of this LabelRegion.

origin

public LabelRegion.Origin origin()

getLabel

public T getLabel()

getCenterOfMass

public RealLocalizable getCenterOfMass()

randomAccess

public LabelRegionRandomAccess<T> randomAccess()

Specified by:

randomAccess in interface RandomAccessible<BoolType>

randomAccess

public RandomAccess<BoolType> randomAccess(Interval interval)

Specified by:

randomAccess in interface RandomAccessible<BoolType>

cursor

public LabelRegionCursor cursor()

Specified by:

cursor in interface IterableInterval<Void>

Specified by:

cursor in interface IterableRealInterval<Void>

localizingCursor

public LabelRegionCursor localizingCursor()

Specified by:

localizingCursor in interface IterableInterval<Void>

Specified by:

localizingCursor in interface IterableRealInterval<Void>

size

public long size()

Specified by:

size in interface IterableRealInterval<Void>

firstElement

public Void firstElement()

Specified by:

firstElement in interface IterableRealInterval<Void>

iterationOrder

public Object iterationOrder()

Specified by:

iterationOrder in interface IterableRealInterval<Void>

iterator

public LabelRegionCursor iterator()

Specified by:

iterator in interface Iterable<Void>

fwd

public void fwd(int d)

Specified by:

fwd in interface Positionable

bck

public void bck(int d)

Specified by:

bck in interface Positionable

move

public void move(int distance,
                 int d)

Specified by:

move in interface Positionable

move

public void move(long distance,
                 int d)

Specified by:

move in interface Positionable

move

public void move(Localizable localizable)

Specified by:

move in interface Positionable

move

public void move(int[] distance)

Specified by:

move in interface Positionable

move

public void move(long[] distance)

Specified by:

move in interface Positionable

setPosition

public void setPosition(Localizable localizable)

Specified by:

setPosition in interface Positionable

setPosition

public void setPosition(int[] pos)

Specified by:

setPosition in interface Positionable

setPosition

public void setPosition(long[] pos)

Specified by:

setPosition in interface Positionable

setPosition

public void setPosition(int pos,
                        int d)

Specified by:

setPosition in interface Positionable

setPosition

public void setPosition(long pos,
                        int d)

Specified by:

setPosition in interface Positionable

realMin

public double realMin(int d)

Specified by:

realMin in interface RealInterval

realMin

public void realMin(double[] min)

Specified by:

realMin in interface RealInterval

realMin

public void realMin(RealPositionable min)

Specified by:

realMin in interface RealInterval

realMax

public double realMax(int d)

Specified by:

realMax in interface RealInterval

realMax

public void realMax(double[] max)

Specified by:

realMax in interface RealInterval

realMax

public void realMax(RealPositionable max)

Specified by:

realMax in interface RealInterval

min

public long min(int d)

Specified by:

min in interface Interval

min

public void min(long[] min)

Specified by:

min in interface Interval

min

public void min(Positionable min)

Specified by:

min in interface Interval

max

public long max(int d)

Specified by:

max in interface Interval

max

public void max(long[] max)

Specified by:

max in interface Interval

max

public void max(Positionable max)

Specified by:

max in interface Interval

dimensions

public void dimensions(long[] dimensions)

Specified by:

dimensions in interface Dimensions

dimension

public long dimension(int d)

Specified by:

dimension in interface Dimensions