net.imglib2.labeling

Class LabelingView<L extends Comparable<L>>

java.lang.Object

net.imglib2.AbstractWrappedRealInterval<I>

net.imglib2.AbstractWrappedInterval<RandomAccessibleInterval<T>>

net.imglib2.view.IterableRandomAccessibleInterval<LabelingType<L>>

net.imglib2.labeling.LabelingView<L>

All Implemented Interfaces:

Iterable<LabelingType<L>>, Dimensions, EuclideanSpace, Interval, IterableInterval<LabelingType<L>>, IterableRealInterval<LabelingType<L>>, Labeling<L>, RandomAccessible<LabelingType<L>>, RandomAccessibleInterval<LabelingType<L>>, RealInterval, View, SubIntervalIterable<LabelingType<L>>

Deprecated.

@Deprecated
public class LabelingView<L extends Comparable<L>>
extends IterableRandomAccessibleInterval<LabelingType<L>>
implements Labeling<L>, SubIntervalIterable<LabelingType<L>>

Allows a RandomAccessibleInterval of type LabelingType to be treated as a Labeling.

Author:

Christian Dietz, Martin Horn

Field Summary

Fields

Modifier and Type	Field and Description
protected LabelingROIStrategy<L,? extends Labeling<L>>	m_strategy Deprecated.

Fields inherited from class net.imglib2.AbstractWrappedRealInterval

sourceInterval

Constructor Summary

Constructors

Constructor and Description
LabelingView(RandomAccessibleInterval<LabelingType<L>> in, LabelingFactory<L> fac) Deprecated.

Method Summary

Modifier and Type	Method and Description
Labeling<L>	copy() Deprecated. Copy method
Cursor<LabelingType<L>>	cursor() Deprecated.
Cursor<LabelingType<L>>	cursor(Interval interval) Deprecated.
<LL extends Comparable<LL>> LabelingFactory<LL>	factory() Deprecated. Factory
long	getArea(L label) Deprecated. Return the area or suitable N-d analog of the labeled object
boolean	getExtents(L label, long[] minExtents, long[] maxExtents) Deprecated. find the coordinates of the bounding box around the given label.
IterableRegionOfInterest	getIterableRegionOfInterest(L label) Deprecated. Get a ROI that represents the pixels with the given label
Collection<L>	getLabels() Deprecated. Find all labels in the space
boolean	getRasterStart(L label, long[] start) Deprecated. Find the first pixel in a raster scan of the object with the given label.
RegionOfInterest	getRegionOfInterest(L label) Deprecated. Get a region of interest optimized to determine point membership
Cursor<LabelingType<L>>	localizingCursor() Deprecated.
Cursor<LabelingType<L>>	localizingCursor(Interval interval) Deprecated.
Object	subIntervalIterationOrder(Interval interval) Deprecated.
boolean	supportsOptimizedCursor(Interval interval) Deprecated.

Methods inherited from class net.imglib2.view.IterableRandomAccessibleInterval

create, firstElement, iterationOrder, iterator, randomAccess, randomAccess, size

Methods inherited from class net.imglib2.AbstractWrappedInterval

dimension, dimensions, max, max, max, min, min, min

Methods inherited from class net.imglib2.AbstractWrappedRealInterval

getSource, numDimensions, realMax, realMax, realMax, realMin, realMin, realMin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.RandomAccessible

randomAccess, randomAccess

Methods inherited from interface net.imglib2.IterableRealInterval

firstElement, iterationOrder, size

Methods inherited from interface java.lang.Iterable

forEach, iterator, spliterator

Methods inherited from interface net.imglib2.Interval

max, max, max, min, min, min

Methods inherited from interface net.imglib2.RealInterval

realMax, realMax, realMax, realMin, realMin, realMin

Methods inherited from interface net.imglib2.Dimensions

dimension, dimensions

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Field Detail

m_strategy

protected LabelingROIStrategy<L extends Comparable<L>,? extends Labeling<L extends Comparable<L>>> m_strategy

Deprecated.

Constructor Detail

LabelingView

public LabelingView(RandomAccessibleInterval<LabelingType<L>> in,
                    LabelingFactory<L> fac)

Deprecated.

Parameters:

in - the RandomAccessibleInterval to be wrapped

fac - factory to create a new Labeling

Method Detail

getExtents

public boolean getExtents(L label,
                          long[] minExtents,
                          long[] maxExtents)

Deprecated.

Description copied from interface: Labeling

find the coordinates of the bounding box around the given label. The the minimum extents are inclusive (there will be pixels at the coordinates of the minimum extents) and the maximum extents are exclusive(all pixels will have coordinates less than the maximum extents)

Specified by:

getExtents in interface Labeling<L extends Comparable<L>>

Parameters:

label - - find pixels with this label

Returns:

true if some pixels are labeled, false if none have the label

getRasterStart

public boolean getRasterStart(L label,
                              long[] start)

Deprecated.

Description copied from interface: Labeling

Find the first pixel in a raster scan of the object with the given label.

Specified by:

getRasterStart in interface Labeling<L extends Comparable<L>>

getArea

public long getArea(L label)

Deprecated.

Description copied from interface: Labeling

Return the area or suitable N-d analog of the labeled object

Specified by:

getArea in interface Labeling<L extends Comparable<L>>

Parameters:

label - - label for object in question

Returns:

area in units of pixel / voxel / etc.

getLabels

public Collection<L> getLabels()

Deprecated.

Description copied from interface: Labeling

Find all labels in the space

Specified by:

getLabels in interface Labeling<L extends Comparable<L>>

Returns:

a collection of the labels.

cursor

public Cursor<LabelingType<L>> cursor()

Deprecated.

Specified by:

cursor in interface IterableInterval<LabelingType<L extends Comparable<L>>>

Specified by:

cursor in interface IterableRealInterval<LabelingType<L extends Comparable<L>>>

Overrides:

cursor in class IterableRandomAccessibleInterval<LabelingType<L extends Comparable<L>>>

localizingCursor

public Cursor<LabelingType<L>> localizingCursor()

Deprecated.

Specified by:

localizingCursor in interface IterableInterval<LabelingType<L extends Comparable<L>>>

Specified by:

localizingCursor in interface IterableRealInterval<LabelingType<L extends Comparable<L>>>

Overrides:

localizingCursor in class IterableRandomAccessibleInterval<LabelingType<L extends Comparable<L>>>

getRegionOfInterest

public RegionOfInterest getRegionOfInterest(L label)

Deprecated.

Description copied from interface: Labeling

Get a region of interest optimized to determine point membership

Specified by:

getRegionOfInterest in interface Labeling<L extends Comparable<L>>

Parameters:

label - The ROI will represent the area labeled with this label

Returns:

a region of interest

getIterableRegionOfInterest

public IterableRegionOfInterest getIterableRegionOfInterest(L label)

Deprecated.

Description copied from interface: Labeling

Get a ROI that represents the pixels with the given label

Specified by:

getIterableRegionOfInterest in interface Labeling<L extends Comparable<L>>

copy

public Labeling<L> copy()

Deprecated.

Description copied from interface: Labeling

Copy method

Specified by:

copy in interface Labeling<L extends Comparable<L>>

Returns:

copy of the labeling

factory

public <LL extends Comparable<LL>> LabelingFactory<LL> factory()

Deprecated.

Description copied from interface: Labeling

Factory

Specified by:

factory in interface Labeling<L extends Comparable<L>>

Returns:

create new labeling

supportsOptimizedCursor

public boolean supportsOptimizedCursor(Interval interval)

Deprecated.

Specified by:

supportsOptimizedCursor in interface SubIntervalIterable<LabelingType<L extends Comparable<L>>>

subIntervalIterationOrder

public Object subIntervalIterationOrder(Interval interval)

Deprecated.

Specified by:

subIntervalIterationOrder in interface SubIntervalIterable<LabelingType<L extends Comparable<L>>>

cursor

public Cursor<LabelingType<L>> cursor(Interval interval)

Deprecated.

Specified by:

cursor in interface SubIntervalIterable<LabelingType<L extends Comparable<L>>>

localizingCursor

public Cursor<LabelingType<L>> localizingCursor(Interval interval)

Deprecated.

Specified by:

localizingCursor in interface SubIntervalIterable<LabelingType<L extends Comparable<L>>>