Uses of Interface
net.imglib2.mesh.Mesh

Packages that use Mesh

Package	Description
net.imglib2.mesh
net.imglib2.mesh.alg
net.imglib2.mesh.alg.hull
net.imglib2.mesh.alg.zslicer
net.imglib2.mesh.impl.naive	Implementations of Mesh that are based on arrays of floats and doubles using gnu.trove.list.array.
net.imglib2.mesh.impl.nio	Mesh implemented using Buffer objects.
net.imglib2.mesh.io.ply
net.imglib2.mesh.io.stl
net.imglib2.mesh.util	General utils to manipulate and interrogate meshes.
net.imglib2.mesh.view

Uses of Mesh in net.imglib2.mesh

Methods in net.imglib2.mesh that return Mesh

Modifier and Type	Method	Description
static Mesh	Meshes.boundingBoxMesh(Mesh input)	Computes and returns an oriented bounding box Mesh
static <T extends BooleanType<T>> Mesh	Meshes.marchingCubes(RandomAccessibleInterval<T> source)	Creates mesh e.g.
static <T extends RealType<T>> Mesh	Meshes.marchingCubes(RandomAccessibleInterval<T> source, double isoLevel)	Creates mesh e.g.
Mesh	Triangle.mesh()	The mesh to which the triangle belongs.
Mesh	Triangles.mesh()	The mesh to which the collection of triangles belongs.
Mesh	Vertex.mesh()	The mesh to which the vertex belongs.
Mesh	Vertices.mesh()	The mesh to which the collection of vertices belongs.
static Mesh	Meshes.simplify(Mesh mesh, float target_percent, float agressiveness)	Simplifies a given mesh.

Methods in net.imglib2.mesh with parameters of type Mesh

Modifier and Type	Method	Description
static RealInterval	Meshes.boundingBox(Mesh mesh)	Computes and returns an oriented bounding box RealInterval
static Mesh	Meshes.boundingBoxMesh(Mesh input)	Computes and returns an oriented bounding box Mesh
static void	Meshes.calculateNormals(Mesh src, Mesh dest)	Calculates the normals for a mesh.
static RealPoint	Meshes.center(Mesh m)	Finds the center of a mesh using vertices.
static RealPoint	MeshStats.centroid(Mesh input)	Returns the centroid of the mesh, that is the center of gravity of its volume.
static double	MeshStats.compactness(Mesh mesh)	Returns the compactness of the mesh.
static Iterable<BufferMesh>	Meshes.connectedComponents(Mesh mesh)	Returns an iterable over the connected components of the specified mesh.
static double	MeshStats.convexHullSurfaceArea(Mesh mesh)	Computes the surface area of the convex hull of the specified mesh.
static long	MeshStats.convexHullVerticesCount(Mesh input)	Describes the number of vertices on the surface of the convex hull of Mesh.
static double	MeshStats.convexHullVolume(Mesh mesh)	Computes the volume of the convex hull of the specified mesh.
static double	MeshStats.convexity(Mesh mesh)	Returns the convexity of a mesh.
static double	MeshStats.convexity(Mesh mesh, Mesh convexHull)	Returns the convexity of a mesh.
static void	Meshes.copy(Mesh src, Mesh dest)	Copies a mesh into another mesh.
static RealMatrix	MeshStats.elongation(Mesh input)	Describes the elogation of a Mesh.
static double	MeshStats.mainElongation(Mesh input)	Describes the elongation of the two larger principle axes of the minimum box containing a Mesh.
static double	MeshStats.medianElongation(Mesh input)	Describes the elongation of the two smaller principle axes of the minimum box containing a Mesh.
static int	Meshes.nConnectedComponents(Mesh mesh)	Returns the number of connected components in the specified mesh.
static BufferMesh	Meshes.removeDuplicateVertices(Mesh mesh, int precision)	Creates a new mesh from a given mesh without any duplicate vertices.
static void	Meshes.scale(Mesh mesh, double[] scale)	Scales the vertices position by the amount specified by the array.
static Mesh	Meshes.simplify(Mesh mesh, float target_percent, float agressiveness)	Simplifies a given mesh.
static double	MeshStats.solidity(Mesh mesh)	Returns the solidity of a mesh.
static double	MeshStats.solidity(Mesh mesh, Mesh convexHull)	Returns the solidity of a mesh.
static double	MeshStats.spareness(Mesh input)	Describes the spareness of a Mesh.
static double	MeshStats.sphericity(Mesh mesh)	Returns the sphericity of a mesh.
static double	MeshStats.surfaceArea(Mesh mesh)	Returns the surface area of a mesh.
static void	Meshes.translate(Mesh mesh, double[] translate)	Translates the vertices position by the amount specified by the array.
static void	Meshes.translateScale(Mesh mesh, double[] translate, double[] scale)	Translates the vertices position by the amount specified by the array, then scales the coordinates.
static long	MeshStats.verticesCount(Mesh input)	Describes the number of vertices on the surface of a Mesh.
static double	MeshStats.volume(Mesh mesh)	Computes the volume of the specified mesh.

Method parameters in net.imglib2.mesh with type arguments of type Mesh

Modifier and Type	Method	Description
static BufferMesh	Meshes.merge(Iterable<Mesh> meshes)

Uses of Mesh in net.imglib2.mesh.alg

Methods in net.imglib2.mesh.alg that return Mesh

Modifier and Type	Method	Description
static <T extends BooleanType<T>> Mesh	MarchingCubesBooleanType.calculate(RandomAccessibleInterval<T> input)	Generates a Mesh surface from a RandomAccessibleInterval, containing all points with data value true
static <T extends RealType<T>> Mesh	MarchingCubesRealType.calculate(RandomAccessibleInterval<T> input, double isoLevel)	Generates a Mesh surface from a RandomAccessibleInterval, containing all points with data value isolevel
static <T extends BooleanType<T>> Mesh	MarchingCubesBooleanType.compute(RandomAccessibleInterval<T> input, Mesh output)
static <T extends RealType<T>> Mesh	MarchingCubesRealType.compute(RandomAccessibleInterval<T> input, double isoLevel, Mesh output)
Mesh	SimplifyMesh.simplify(float target_percent, double agressiveness)	Begins the simplification process.

Methods in net.imglib2.mesh.alg with parameters of type Mesh

Modifier and Type	Method	Description
static RealMatrix	InertiaTensor.calculate(Mesh input)	Computes the inertia tensor.
static BufferMesh	RemoveDuplicateVertices.calculate(Mesh mesh, int precision)
static <T extends BooleanType<T>> Mesh	MarchingCubesBooleanType.compute(RandomAccessibleInterval<T> input, Mesh output)
static <T extends RealType<T>> Mesh	MarchingCubesRealType.compute(RandomAccessibleInterval<T> input, double isoLevel, Mesh output)
static EllipsoidFitter.Ellipsoid	EllipsoidFitter.fit(Mesh mesh)	Fit an ellipsoid to the convex-Hull of a 3D mesh.
static EllipsoidFitter.Ellipsoid	EllipsoidFitter.fitOnConvexHull(Mesh mesh)	Fit an ellipsoid to a 3D mesh, assuming it is the convex-Hull.
static Iterable<BufferMesh>	MeshConnectedComponents.iterable(Mesh mesh)
static Iterator<BufferMesh>	MeshConnectedComponents.iterator(Mesh mesh)
static int	MeshConnectedComponents.n(Mesh mesh)	Returns the number of connected components in this mesh.
static BufferMesh	TaubinSmoothing.smooth(Mesh mesh)	Smooth the specified mesh using the Taubin smoothing algorithm, with default parameters.
static BufferMesh	TaubinSmoothing.smooth(Mesh mesh, int iters, double passBand)	Smooth the specified mesh using the Taubin smoothing algorithm, using cotangent weights.
static BufferMesh	TaubinSmoothing.smooth(Mesh mesh, int iters, double lambda, double mu, TaubinSmoothing.TaubinWeightType weightType)	Smooth the specified mesh using the Taubin smoothing algorithm.
static Img<BitType>	Voxelization.voxelize(Mesh mesh, int width, int height, int depth)	Voxelizes mesh
static Img<BitType>	Voxelization.voxelize(Mesh mesh, Dimensions dims)	Voxelizes mesh
static <B extends BooleanType<B>> void	Voxelization.voxelize(Mesh mesh, RandomAccessibleInterval<B> out)	Voxelizes mesh

Constructors in net.imglib2.mesh.alg with parameters of type Mesh

Constructor	Description
Interior(Mesh mesh, double scale)
Interior(Mesh mesh, RealInterval boundingBox, double scale)
MeshCursor(RandomAccess<T> ra, Mesh mesh, double[] cal)
MeshCursor(RandomAccess<T> ra, Mesh mesh, double[] cal, RealInterval boundingBox)
MeshIterable(RandomAccessible<T> ra, Mesh mesh, double[] calibration)	Creates an iterable for the pixels of the specified image inside the specified mesh.
MeshIterable(RandomAccessible<T> ra, Mesh mesh, double[] calibration, RealInterval boundingBox)	Creates an iterable for the pixels of the specified image inside the specified mesh.
MollerTrumbore(Mesh mesh)
SimplifyMesh(Mesh mesh)

Uses of Mesh in net.imglib2.mesh.alg.hull

Methods in net.imglib2.mesh.alg.hull with parameters of type Mesh

Modifier and Type	Method	Description
static NaiveDoubleMesh	ConvexHull.calculate(Mesh input)	Computes the convex hull of a Mesh
static double	ConvexHull.calculateEpsilon(Mesh input)	Computes the tolerance (epsilon) of the Mesh.

Uses of Mesh in net.imglib2.mesh.alg.zslicer

Methods in net.imglib2.mesh.alg.zslicer with parameters of type Mesh

Modifier and Type	Method	Description
static Slice	ZSlicer.slice(Mesh mesh, double z, double zScale)	Slice a mesh by a Z-plane.
static List<Slice>	ZSlicer.slices(Mesh mesh, double[] zs, double zScale)

Uses of Mesh in net.imglib2.mesh.impl.naive

Classes in net.imglib2.mesh.impl.naive that implement Mesh

Modifier and Type	Class	Description
class	NaiveDoubleMesh
class	NaiveFloatMesh

Methods in net.imglib2.mesh.impl.naive that return Mesh

Modifier and Type	Method	Description
Mesh	NaiveDoubleMesh.Triangles.mesh()
Mesh	NaiveDoubleMesh.Vertices.mesh()
Mesh	NaiveFloatMesh.Triangles.mesh()
Mesh	NaiveFloatMesh.Vertices.mesh()

Uses of Mesh in net.imglib2.mesh.impl.nio

Classes in net.imglib2.mesh.impl.nio that implement Mesh

Modifier and Type	Class	Description
class	BufferMesh	Mesh implemented using Buffer objects.

Methods in net.imglib2.mesh.impl.nio that return Mesh

Modifier and Type	Method	Description
Mesh	BufferMesh.Triangles.mesh()
Mesh	BufferMesh.Vertices.mesh()

Uses of Mesh in net.imglib2.mesh.io.ply

Methods in net.imglib2.mesh.io.ply with parameters of type Mesh

Modifier and Type	Method	Description
static void	PLYMeshIO.read(File plyFile, Mesh mesh)
static void	PLYMeshIO.read(InputStream plyIS, Mesh mesh)
static void	PLYMeshIO.save(Mesh data, String destination)
static byte[]	PLYMeshIO.writeAscii(Mesh mesh)
static byte[]	PLYMeshIO.writeBinary(Mesh mesh)

Uses of Mesh in net.imglib2.mesh.io.stl

Methods in net.imglib2.mesh.io.stl that return Mesh

Modifier and Type	Method	Description
static Mesh	STLMeshIO.open(String source)

Methods in net.imglib2.mesh.io.stl with parameters of type Mesh

Modifier and Type	Method	Description
static void	STLMeshIO.read(Mesh mesh, byte[] data)
static void	STLMeshIO.read(Mesh mesh, File stlFile)
static void	STLMeshIO.save(Mesh data, String destination)
static byte[]	STLMeshIO.write(Mesh mesh)	Writes the facets into a byte[] that can then be saved into a file

Uses of Mesh in net.imglib2.mesh.util

Methods in net.imglib2.mesh.util that return Mesh

Modifier and Type	Method	Description
static Mesh	Icosahedron.core()

Methods in net.imglib2.mesh.util with parameters of type Mesh

Modifier and Type	Method	Description
static BufferMesh	Icosahedron.refine(Mesh core)	Creates a new, finer icosahedron, based on the one specified, by subdividing each triangle into 4 smaller triangle, with vertices still on the icosahedron.
static String	MeshUtil.triangleStr(Mesh mesh, long id)	Produces a string representation of a triangle.

Uses of Mesh in net.imglib2.mesh.view

Classes in net.imglib2.mesh.view that implement Mesh

Modifier and Type	Class	Description
class	TranslateMesh	Read-only view of a mesh where vertices are translated by a fixed amount.

Methods in net.imglib2.mesh.view that return Mesh

Modifier and Type	Method	Description
static Mesh	TranslateMesh.translate(Mesh in, RealLocalizable t)

Methods in net.imglib2.mesh.view with parameters of type Mesh

Modifier and Type	Method	Description
static Mesh	TranslateMesh.translate(Mesh in, RealLocalizable t)