Package net.imglib2.mesh.alg

Class MeshIterable<T>

java.lang.Object

net.imglib2.mesh.alg.MeshIterable<T>

All Implemented Interfaces:

Iterable<T>, Dimensions, EuclideanSpace, Interval, IterableInterval<T>, IterableRealInterval<T>, RealInterval, Typed<T>

public class MeshIterable<T>
extends Object
implements IterableInterval<T>

Constructor Summary

Constructors

Constructor	Description
MeshIterable(RandomAccessible<T> ra, Mesh mesh, double[] calibration)	Creates an iterable for the pixels of the specified image inside the specified mesh.
MeshIterable(RandomAccessible<T> ra, Mesh mesh, double[] calibration, RealInterval boundingBox)	Creates an iterable for the pixels of the specified image inside the specified mesh.

Method Summary

Modifier and Type	Method	Description
Cursor<T>	cursor()
T	firstElement()
Object	iterationOrder()
Iterator<T>	iterator()
Cursor<T>	localizingCursor()
long	max(int d)
long	min(int d)
int	numDimensions()
long	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.Dimensions

dimensions, dimensions, dimensionsAsLongArray, dimensionsAsPoint

Methods inherited from interface net.imglib2.Interval

dimension, max, max, maxAsLongArray, maxAsPoint, min, min, minAsLongArray, minAsPoint, realMax, realMin

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface net.imglib2.IterableInterval

localizingSpliterator, spliterator

Methods inherited from interface net.imglib2.IterableRealInterval

getType, parallelStream, stream

Methods inherited from interface net.imglib2.RealInterval

maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint, realMax, realMax, realMin, realMin

Constructor Detail

MeshIterable

public MeshIterable(RandomAccessible<T> ra,
                    Mesh mesh,
                    double[] calibration)

Creates an iterable for the pixels of the specified image inside the specified mesh. A calibration array (pixel sizes) is used to transform the pixel coordinates into mesh coordinates. Recompute the mesh bounding-box.

Parameters:

ra - the random accessible to iterate over. It is the caller responsibility to ensure the random accessible is extended to accommodate the mesh coordinates.

mesh - the mesh to iterate in.

calibration - the calibration array, used to map pixel coordinates to mesh coordinates (mesh_x = pixel_x * calibration[0] etc).

MeshIterable

public MeshIterable(RandomAccessible<T> ra,
                    Mesh mesh,
                    double[] calibration,
                    RealInterval boundingBox)

Creates an iterable for the pixels of the specified image inside the specified mesh. A calibration array (pixel sizes) is used to transform the pixel coordinates into mesh coordinates.

Parameters:

ra - the random accessible to iterate over. It is the caller responsibility to ensure the random accessible is extended to accommodate the mesh coordinates.

mesh - the mesh to iterate in.

calibration - the calibration array, used to map pixel coordinates to mesh coordinates (mesh_x = pixel_x * calibration[0] etc).

boundingBox - the bounding-box if it's available, to avoid recomputing it.

Method Detail

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface EuclideanSpace

size

public long size()

Specified by:

size in interface IterableRealInterval<T>

firstElement

public T firstElement()

Specified by:

firstElement in interface IterableRealInterval<T>

iterationOrder

public Object iterationOrder()

Specified by:

iterationOrder in interface IterableRealInterval<T>

iterator

public Iterator<T> iterator()

Specified by:

iterator in interface Iterable<T>

Specified by:

iterator in interface IterableRealInterval<T>

min

public long min(int d)

Specified by:

min in interface Interval

max

public long max(int d)

Specified by:

max in interface Interval

cursor

public Cursor<T> cursor()

Specified by:

cursor in interface IterableInterval<T>

Specified by:

cursor in interface IterableRealInterval<T>

localizingCursor

public Cursor<T> localizingCursor()

Specified by:

localizingCursor in interface IterableInterval<T>

Specified by:

localizingCursor in interface IterableRealInterval<T>