A B C D E F G H I L M N O P Q R S T U V W

A

about() - Method in class net.imagej.legacy.LegacyImageJApp

AbstractImagePlusLegacyConverter<O> - Class in net.imagej.legacy.convert

Base Converter class for converting ImagePlus to other classes.

AbstractImagePlusLegacyConverter() - Constructor for class net.imagej.legacy.convert.AbstractImagePlusLegacyConverter

AbstractLegacyAdapter - Class in net.imagej.legacy.ui

Abstract LegacyAdapter implementation.

AbstractLegacyAdapter(LegacyService) - Constructor for class net.imagej.legacy.ui.AbstractLegacyAdapter

AbstractLegacyConverter<I,O> - Class in net.imagej.legacy.convert

Base Converter class for converting ImageJ 1.x data structures.

AbstractLegacyConverter() - Constructor for class net.imagej.legacy.convert.AbstractLegacyConverter

AbstractMaskPredicateToRoiConverter<M extends net.imglib2.roi.MaskPredicate<?>,R extends ij.gui.Roi> - Class in net.imagej.legacy.convert.roi

Abstract base class for converting MaskPredicates to Rois.

AbstractMaskPredicateToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

AbstractMaskPredicateUnwrapConverter<M extends net.imglib2.roi.MaskPredicate<?>> - Class in net.imagej.legacy.convert.roi

Abstract base class for converters which unwrap wrapped MaskPredicates.

AbstractMaskPredicateUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter

AbstractPolygonRoiWrapper - Class in net.imagej.legacy.convert.roi

Abstract base class for wrapping ImageJ 1.x objects which are PolygonRois (i.e.

AbstractPolygonRoiWrapper(int[], int[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.

AbstractPolygonRoiWrapper(float[], float[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.

AbstractPolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Mask.

AbstractPolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Mask.

AbstractRoiToMaskPredicateConverter<R extends ij.gui.Roi,M extends net.imglib2.roi.MaskPredicate<? extends net.imglib2.RealLocalizable>> - Class in net.imagej.legacy.convert.roi

Base class for all converters which convert Roi to MaskPredicate.

AbstractRoiToMaskPredicateConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

AbstractRoiUnwrapConverter<R extends ij.gui.Roi> - Class in net.imagej.legacy.convert.roi

Abstract base class for converters which unwrap wrapped ImageJ 1.x Rois.

AbstractRoiUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter

AbstractTableToResultsTableConverter() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter

activate() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

ActiveImagePlusPreprocessor - Class in net.imagej.legacy.plugin

TODO: this class can be removed once Dataset and ImagePlus conversion is done properly via wrapping.

ActiveImagePlusPreprocessor() - Constructor for class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor

add(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

Adds the given object to the end of the column.

add(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

add(Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

add(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

add(ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper

add(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper

addAliases(ScriptService) - Method in class net.imagej.legacy.IJ1Helper

Add name aliases for ImageJ1 classes to the ScriptService.

addAll(Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

addAll(int, Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

addAll(Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

addAll(int, Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

addAll(Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper

addAll(int, Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper

addColumns() - Method in class net.imagej.legacy.convert.TableWrapper

addCommand(String, String, String) - Method in class net.imagej.legacy.IJ1Helper

addLabel(String, String) - Method in class net.imagej.legacy.convert.TableWrapper

addMenuItem(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks

addMenuItems() - Method in class net.imagej.legacy.IJ1Helper

Adds legacy-compatible scripts and commands to the ImageJ1 menu structure.

addPoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

The position of this point will be stored as a float, which may result in a loss of precision.

addSearchBar(Object, IJ1Helper) - Method in class net.imagej.legacy.search.SearchBarHacker

Adds a search bar to the main image frame.

addTaskBar(Object) - Method in class net.imagej.legacy.task.TaskMonitorButtonHacker

Adds a task progress monitor bar to the main image frame.

addValue(int, double) - Method in class net.imagej.legacy.convert.TableWrapper

addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

This will always throw an UnsupportedOperationException.

addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

This will always throw an UnsupportedOperationException.

addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

This will always throw an UnsupportedOperationException.

addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

This will always throw an UnsupportedOperationException.

appAbout() - Method in class net.imagej.legacy.IJ1Helper

Displays the About ImageJ 1.x dialog.

appendColumn() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendColumns(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendRow() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendRows(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

appendRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

applyMacro(String) - Method in class net.imagej.legacy.convert.TableWrapper

appPrefs() - Method in class net.imagej.legacy.IJ1Helper

Handles display of the ImageJ 1.x preferences.

appQuit() - Method in class net.imagej.legacy.IJ1Helper

Handles shutdown of ImageJ 1.x.

attachResultsTable() - Static method in class net.imagej.legacy.Macros

B

Batch() - Constructor for class net.imagej.legacy.LegacyCommandline.Batch

BinaryCompositeMaskPredicateToShapeRoiConverter - Class in net.imagej.legacy.convert.roi

Converts BinaryCompositeMaskPredicate to ShapeRoi.

BinaryCompositeMaskPredicateToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

boundaryType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

boundaryType() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

BoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box

Converts a Box to a Roi.

BoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

BoxWrapper - Class in net.imagej.legacy.convert.roi.box

A Roi with an associated WritableBox.

BoxWrapper(WritableBox) - Constructor for class net.imagej.legacy.convert.roi.box.BoxWrapper

ByteTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable

C

canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.AbstractLegacyConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter

canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.StringToDatasetConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.StringToDatasetConverter

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter

canConvert(Object, Type) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable

canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable

canView(Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

canView(Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

capture() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

center() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

center() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

chooseFile(String, File, String) - Method in class net.imagej.legacy.ui.LegacyUI

chooseFiles(File, File[], FileFilter, String) - Method in class net.imagej.legacy.ui.LegacyUI

classFromSearchResult(SearchResult) - Method in class net.imagej.legacy.search.LegacySourceSearchActionFactory

clear() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

clear() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

clear() - Method in class net.imagej.legacy.convert.TableListWrapper

colorOptions(ColorRGB, ColorRGB) - Method in class net.imagej.legacy.OptionsSynchronizer

ColorTableHarmonizer - Class in net.imagej.legacy.translate

This class synchronizes ImageDisplay ColorTables with ImagePlus LUTs.

ColorTableHarmonizer(ImageDisplayService) - Constructor for class net.imagej.legacy.translate.ColorTableHarmonizer

commandsName() - Method in class net.imagej.legacy.IJ1Helper

CompositeHarmonizer - Class in net.imagej.legacy.translate

This class sets composite channel count for Datasets to match a given ImagePlus.

CompositeHarmonizer() - Constructor for class net.imagej.legacy.translate.CompositeHarmonizer

contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

contains(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToImgPlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImgPlusToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

convert(M) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

convert(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter

convert(BinaryCompositeMaskPredicate<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

convert(Box) - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

convert(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

convert(WritableBox) - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter

convert(Ellipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

convert(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

convert(WritableEllipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter

convert(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

convert(Line) - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter

convert(WritableLine) - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter

convert(PointMask) - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

convert(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

convert(RealPointCollection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

convert(WritablePointMask) - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

convert - Variable in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

convert(WritableRealPointCollection<L>) - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

convert(Polygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

convert(WritablePolygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

convert(Polyline) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

convert(WritablePolyline) - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

convert(RealMaskRealInterval) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

convert(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

convert(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter

convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableUnwrapper

create(String, String) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor

create(String, String) - Method in interface net.imagej.legacy.plugin.LegacyEditor

create(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs

create(SearchResult) - Method in class net.imagej.legacy.search.LegacyHelpSearchActionFactory

create(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory

createDataView(Data) - Method in class net.imagej.legacy.display.LegacyImageDisplayService

createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.DisplayCreator

createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.ImageTranslator

Creates a ImageDisplay from an ImagePlus.

createDisplayWindow(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI

createInEditor(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks

Creates the given file in the registered legacy editor, if any.

createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator

createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImagePlusCreator

createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator

createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator

Creates an ImagePlus from a ImageDisplay.

createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImageTranslator

createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator

D

DataHarmonizer - Interface in net.imagej.legacy.translate

General interface for all data harmonizers.

DatasetToImagePlusConverter - Class in net.imagej.legacy.convert

Converter implementation for converting Dataset to a ImagePlus.

DatasetToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DatasetToImagePlusConverter

DatasetUtils - Class in net.imagej.legacy.translate

Utility methods applicable to Datasets.

debug(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

Debug() - Constructor for class net.imagej.legacy.LegacyCommandline.Debug

DefaultImagePlusDisplay - Class in net.imagej.legacy.display

Default ImagePlusDisplay implementation.

DefaultImagePlusDisplay() - Constructor for class net.imagej.legacy.display.DefaultImagePlusDisplay

DefaultLegacyEditor - Class in net.imagej.legacy.plugin

The default LegacyEditor plugin.

DefaultLegacyEditor() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyEditor

DefaultLegacyHooks - Class in net.imagej.legacy

The LegacyHooks encapsulating an active LegacyService for use within the patched ImageJ 1.x.

DefaultLegacyHooks(LegacyService) - Constructor for class net.imagej.legacy.DefaultLegacyHooks

DefaultLegacyOpener - Class in net.imagej.legacy.plugin

The default LegacyOpener plugin.

DefaultLegacyOpener() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyOpener

DefaultRoiWrapper<R extends ij.gui.Roi> - Class in net.imagej.legacy.convert.roi

Wraps any Roi as a MaskInterval.

DefaultRoiWrapper(R) - Constructor for class net.imagej.legacy.convert.roi.DefaultRoiWrapper

Creates a MaskInterval which wraps the given Roi.

deleteColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper

deleteImagePlus(ImagePlus) - Static method in class net.imagej.legacy.translate.LegacyUtils

Modifies legacy ImageJ data structures so that there are no dangling references to an obsolete ImagePlus.

deleteRow(int) - Method in class net.imagej.legacy.convert.TableWrapper

dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class net.imagej.legacy.ui.LegacyUI

dimension(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

dimensions(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

dimensionsIJ1Compatible(Dataset) - Static method in class net.imagej.legacy.translate.LegacyUtils

Determines if a Dataset's dimensions cannot be represented within a legacy ImageJ ImageStack.

disableRowLabels() - Method in class net.imagej.legacy.convert.TableWrapper

DisplayCreator - Class in net.imagej.legacy.translate

Class to create a Dataset which is linked to an ImagePlus.

DisplayCreator(Context) - Constructor for class net.imagej.legacy.translate.DisplayCreator

DisplayHarmonizer - Interface in net.imagej.legacy.translate

General interface for all DisplayHarmonizers.

dispose() - Method in class net.imagej.legacy.DefaultLegacyHooks

dispose() - Method in class net.imagej.legacy.IJ1Helper

Forcibly shuts down ImageJ1, with no user interaction or opportunity to cancel.

dispose() - Method in class net.imagej.legacy.LegacyService

dispose() - Method in class net.imagej.legacy.ui.LegacyUI

disposing() - Method in class net.imagej.legacy.DefaultLegacyHooks

DoubleToImagePlusConverter - Class in net.imagej.legacy.convert

Converts an image ID in double form to its corresponding ImagePlus object.

DoubleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DoubleToImagePlusConverter

dummy() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter

Returns true iff the linked LegacyService is not fully active.

E

EllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid

Converts an Ellipsoid to an OvalRoi.

EllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

EllipsoidWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid

A OvalRoi with an associated WritableEllipsoid.

EllipsoidWrapper(WritableEllipsoid) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper

endpointOne() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

endpointTwo() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

error(Throwable) - Method in class net.imagej.legacy.DefaultLegacyHooks

Eval() - Constructor for class net.imagej.legacy.LegacyCommandline.Eval

eval(String) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine

eval(Reader) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine

exponent() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

F

Filename() - Constructor for class net.imagej.legacy.LegacyCommandline.Filename

findCommands() - Method in class net.imagej.legacy.command.LegacyCommandFinder

finishRecording() - Method in class net.imagej.legacy.IJ1Helper

Completes recording of a command.

FloatTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable

FocusSearchBar - Class in net.imagej.legacy.search

Command which focuses the ImageJ search bar.

FocusSearchBar() - Constructor for class net.imagej.legacy.search.FocusSearchBar

G

GenericTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable

get(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

get(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

get(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

get(String, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

get(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

get(int) - Method in class net.imagej.legacy.convert.TableListWrapper

getActiveImageDisplay() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getActiveModule() - Static method in class net.imagej.legacy.Macros

getAdditionalMacroFunctions() - Static method in class net.imagej.legacy.IJ1Helper

Gets the result of Interpreter.getAdditionalFunctions().

getApp() - Method in class net.imagej.legacy.LegacyService

getApplicationFrame() - Method in class net.imagej.legacy.ui.LegacyUI

getAppName() - Method in class net.imagej.legacy.DefaultLegacyHooks

Returns the application name for use with ImageJ 1.x.

getAppName() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration

Returns the application name for use with ImageJ 1.x.

getAppVersion() - Method in class net.imagej.legacy.DefaultLegacyHooks

Returns the application version to display in the ImageJ 1.x status bar.

getArg() - Method in class net.imagej.legacy.command.LegacyCommandInfo

Gets the arg portion of the legacy command, if any.

getArtifactId() - Method in class net.imagej.legacy.LegacyImageJApp

getClassLoader() - Method in class net.imagej.legacy.IJ1Helper

getColumnCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getColumnHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getColumnIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getCommands() - Method in class net.imagej.legacy.IJ1Helper

getCompletions(CompletionProvider) - Method in interface net.imagej.legacy.plugin.MacroExtensionAutoCompletionPlugin

getCompletions(CompletionProvider) - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService

getComponent() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

getComponent() - Method in class net.imagej.legacy.ui.LegacyStatusBar

getComponent() - Method in class net.imagej.legacy.ui.LegacyToolBar

getComponentType() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

getComponentType() - Method in class net.imagej.legacy.ui.LegacyStatusBar

getComponentType() - Method in class net.imagej.legacy.ui.LegacyToolBar

getConsolePane() - Method in class net.imagej.legacy.ui.LegacyUI

getContext() - Method in class net.imagej.legacy.DefaultLegacyHooks

getDataViews() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getDefaultImports() - Method in class net.imagej.legacy.plugin.LegacyAutoImporter

getDelegateType() - Method in class net.imagej.legacy.convert.StringToDatasetConverter

getDesktop() - Method in class net.imagej.legacy.ui.LegacyUI

getDirectory(String, File) - Method in class net.imagej.legacy.IJ1Helper

Chooses a directory using ImageJ 1.x' directory chooser.

getDisplayService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getEventService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getExtensions() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage

getFreeColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper

getGroupId() - Method in class net.imagej.legacy.LegacyImageJApp

getHeader() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

getIconURL() - Method in class net.imagej.legacy.DefaultLegacyHooks

Returns the icon for use with ImageJ 1.x.

getIconURL() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration

Returns the icon for use with ImageJ 1.x.

getIdentifier() - Method in class net.imagej.legacy.command.LegacyCommandInfo

getIDList() - Method in class net.imagej.legacy.IJ1Helper

getIJ() - Method in class net.imagej.legacy.IJ1Helper

getIJ1Helper() - Method in class net.imagej.legacy.LegacyService

Gets the helper class responsible for direct interfacing with ImageJ1.

getImage(int) - Method in class net.imagej.legacy.IJ1Helper

getImageDisplays() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getImageDisplays() - Method in class net.imagej.legacy.LegacyImageMap

Gets a list of ImageDisplay instances known to this legacy service.

getImageID(Object) - Method in class net.imagej.legacy.IJ1Helper

Gets the ID of the given ImagePlus object.

getImageMap() - Method in class net.imagej.legacy.LegacyService

Gets the LegacyImageMap associated with this LegacyService.

getImagePlusInstances() - Method in class net.imagej.legacy.LegacyImageMap

Gets a list of ImagePlus instances known to this legacy service.

getInputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter

getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToImgPlusConverter

getInputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.ImgPlusToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter

getInputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter

getInputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper

getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

getInputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

getInputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter

getInputType() - Method in class net.imagej.legacy.convert.StringToDatasetConverter

getInputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable

getInputType() - Method in class net.imagej.legacy.convert.TableUnwrapper

getInstance() - Static method in class net.imagej.legacy.LegacyService

Returns the legacy service associated with the ImageJ 1.x instance in the current class loader.

getInterpreter() - Static method in class net.imagej.legacy.IJ1Helper

Returns the active macro Interpreter.

getLanguageName() - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

getLegacyClassName() - Method in class net.imagej.legacy.command.LegacyCommandInfo

Gets the name of the class backing this legacy command.

getLegacyContext() - Static method in class net.imagej.legacy.IJ1Helper

Gets the SciJava application context linked to the ImageJ 1.x instance.

getLegacyService() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter

getLocation() - Method in class net.imagej.legacy.command.LegacyCommandInfo

getLocationX() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

getLocationY() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

getMacroParameter(String, boolean) - Method in class net.imagej.legacy.IJ1Helper

Gets a macro parameter of type boolean.

getMacroParameter(String, double) - Method in class net.imagej.legacy.IJ1Helper

Gets a macro parameter of type double.

getMacroParameter(String, String) - Method in class net.imagej.legacy.IJ1Helper

Gets a macro parameter of type String.

getMacroParameter(String) - Method in class net.imagej.legacy.IJ1Helper

Gets a macro parameter of type String.

getMenuBar() - Method in class net.imagej.legacy.IJ1Helper

getNames() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage

getOptions() - Method in class net.imagej.legacy.IJ1Helper

Delegates to ImageJ 1.x' Macro.getOptions() function.

getOutputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToImgPlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.ImgPlusToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter

getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter

getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper

getOutputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline

getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection

getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter

getOutputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

getOutputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter

getOutputType() - Method in class net.imagej.legacy.convert.StringToDatasetConverter

getOutputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter

getOutputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter

getOutputType() - Method in class net.imagej.legacy.convert.TableUnwrapper

getOverlays(ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Extracts a list of Overlays from the given ImagePlus.

GetPath - Class in net.imagej.legacy.plugin

Simple command to get a File and return its path.

GetPath() - Constructor for class net.imagej.legacy.plugin.GetPath

getPluginService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService

getPluginType() - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService

getResultLimit() - Method in class net.imagej.legacy.search.SearchOptions

getRoi() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

getRoi() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper

Returns the backing ImageJ 1.x Roi.

getRoi() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

getRoi() - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

getRowCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getRowHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getRowIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getScriptEngine() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage

getScriptsAndNonLegacyCommands() - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

getSearchBar() - Method in class net.imagej.legacy.IJ1Helper

getShortcuts() - Method in class net.imagej.legacy.IJ1Helper

getSource() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper

getSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper

Get associated MaskPredicate.

getSource() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper

getSource() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper

getSource() - Method in class net.imagej.legacy.convert.TableListWrapper

Returns the source {@code List

getSource() - Method in class net.imagej.legacy.convert.TableWrapper

getStatusBar() - Method in class net.imagej.legacy.IJ1Helper

getStatusBar() - Method in class net.imagej.legacy.ui.LegacyUI

getStubPath() - Method in class net.imagej.legacy.SingleInstance

getSystemClipboard() - Method in class net.imagej.legacy.ui.LegacyUI

getTaskBar() - Method in class net.imagej.legacy.IJ1Helper

getThreadAncestors() - Method in class net.imagej.legacy.DefaultLegacyHooks

getTitle(Object) - Static method in class net.imagej.legacy.IJ1Helper

Returns ImagePlus.getTitle() if the object is an ImagePlus, otherwise null.

getToolBar() - Method in class net.imagej.legacy.IJ1Helper

getToolBar() - Method in class net.imagej.legacy.ui.LegacyUI

getUI() - Method in class net.imagej.legacy.ui.LegacyInputHarvester

getUpdatedSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper

Synchronize the two ROIs, and return the associated MaskPredicate.

getUpdatedSource() - Method in class net.imagej.legacy.convert.TableListWrapper

Synchronizes and returns the source {@code List

getVariable(Object, String) - Method in class net.imagej.legacy.IJ1Helper

Gets the value of the specified variable, from the given macro Interpreter.

getVariables(Object) - Method in class net.imagej.legacy.IJ1Helper

Gets the value of the specified variable, from the given macro Interpreter.

getVersion() - Method in class net.imagej.legacy.command.LegacyCommandInfo

getVersion() - Method in class net.imagej.legacy.IJ1Helper

Gets the version of ImageJ 1.x.

getVersion() - Method in class net.imagej.legacy.LegacyImageJApp

getVersion() - Method in class net.imagej.legacy.LegacyService

Gets the version of ImageJ 1.x being used.

getX() - Method in class net.imagej.legacy.IJ1Helper

getY() - Method in class net.imagej.legacy.IJ1Helper

guiScale() - Method in class net.imagej.legacy.IJ1Helper

H

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port

handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run

handle(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument

handleBatchExit(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline

handleBatchOption(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline

handleException(Throwable) - Method in class net.imagej.legacy.IJ1Helper

Delegate exception handling to ImageJ 1.x.

handleException(Throwable) - Method in class net.imagej.legacy.LegacyService

Harmonizer - Class in net.imagej.legacy.translate

Provides methods for synchronizing data between an ImageDisplay and an ImagePlus.

Harmonizer(Context, ImageTranslator) - Constructor for class net.imagej.legacy.translate.Harmonizer

hashCode() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

hasInstance() - Method in class net.imagej.legacy.IJ1Helper

helper() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter

helper() - Method in interface net.imagej.legacy.ui.LegacyAdapter

I

IJ1Helper - Class in net.imagej.legacy

A helper class to interact with ImageJ 1.x.

IJ1Helper(LegacyService) - Constructor for class net.imagej.legacy.IJ1Helper

ij1Helper() - Method in class net.imagej.legacy.LegacyCommandline

IJ1MacroEngine - Class in net.imagej.legacy.plugin

A JSR-223-compliant script engine for the ImageJ 1.x macro language.

IJ1MacroEngine(IJ1Helper) - Constructor for class net.imagej.legacy.plugin.IJ1MacroEngine

Constructs an ImageJ 1.x macro engine.

IJ1MacroLanguage - Class in net.imagej.legacy.plugin

Implements a factory for the ImageJ 1.x Macro language engine.

IJ1MacroLanguage() - Constructor for class net.imagej.legacy.plugin.IJ1MacroLanguage

IJLineToLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts an ImageJ 1.x Line to an ImgLib2 Line.

IJLineToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

IJLineWrapper - Class in net.imagej.legacy.convert.roi.line

Wraps an ImageJ 1.x Line as an ImgLib2 Line.

IJLineWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Creates a new ImageJ 1.x Line with endpoints at the specified integer coordinates, and then wraps this as an ImgLib2 Line.

IJLineWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Creates a new ImageJ 1.x Line with endpoints at the specified real coordinates, and then wraps this as an ImgLib2 Line.

IJLineWrapper(Line) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper

Wraps the given ImageJ 1.x Line as an ImgLib2 Line.

IJPath() - Constructor for class net.imagej.legacy.LegacyCommandline.IJPath

IJRealRoiWrapper<R extends ij.gui.Roi> - Interface in net.imagej.legacy.convert.roi

Wraps ImageJ 1.x Rois as ImgLib2 RealMaskRealInterval

ijRoiPoint(double, double) - Static method in class net.imagej.legacy.convert.roi.Rois

Creates a new IJRoiPoint

IJRoiWrapper<R extends ij.gui.Roi,L> - Interface in net.imagej.legacy.convert.roi

Wraps an ImageJ 1.x Roi as a MaskPredicate.

ImageDisplayToImagePlusConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImageDisplay to an ImagePlus.

ImageDisplayToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

ImageJ2Options - Class in net.imagej.legacy

Allows the setting and persisting of options relevant to ImageJ2, in ImageJ1.

ImageJ2Options() - Constructor for class net.imagej.legacy.ImageJ2Options

ImagePlusCreator - Class in net.imagej.legacy.translate

Creates ImagePluses from ImageDisplay.

ImagePlusCreator(Context) - Constructor for class net.imagej.legacy.translate.ImagePlusCreator

ImagePlusCreatorUtils - Class in net.imagej.legacy.translate

Utility class for ImagePlusCreator.

ImagePlusDisplay - Interface in net.imagej.legacy.display

Marker interface for Display implementations that will be displaying ImagePluses.

ImagePlusDisplayViewer - Class in net.imagej.legacy.display

DisplayViewer implementation for ImagePlus.

ImagePlusDisplayViewer() - Constructor for class net.imagej.legacy.display.ImagePlusDisplayViewer

ImagePlusToDatasetConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImagePlus to a Dataset.

ImagePlusToDatasetConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToDatasetConverter

ImagePlusToImageDisplayConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImagePlus to a ImageDisplay.

ImagePlusToImageDisplayConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter

ImagePlusToImgPlusConverter - Class in net.imagej.legacy.convert

Converter implementation for converting ImagePlus to a ImgPlus.

ImagePlusToImgPlusConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToImgPlusConverter

ImageTitle(ImagePlus) - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle

ImageTitleToImagePlusConverter - Class in net.imagej.legacy.convert

Converts an image title to the corresponding ImagePlus object.

ImageTitleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

ImageTitleToImagePlusConverter.ImageTitle - Class in net.imagej.legacy.convert

Adapter for ImagePlus that emits the image title when ImageTitleToImagePlusConverter.ImageTitle.toString() is called.

ImageTranslator - Class in net.imagej.legacy.translate

Combines DisplayCreator and ImagePlusCreator.

ImageTranslator(LegacyService) - Constructor for class net.imagej.legacy.translate.ImageTranslator

ImgPlusToImagePlusConverter - Class in net.imagej.legacy.convert

Converter implementation for converting Dataset to a ImagePlus.

ImgPlusToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImgPlusToImagePlusConverter

IMP_KEY - Static variable in class net.imagej.legacy.LegacyImageMap

Key for storing ImagePlus instances in a Dataset's map.

incrementCounter() - Method in class net.imagej.legacy.convert.TableWrapper

indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

indexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

initColorTables(Dataset) - Static method in class net.imagej.legacy.translate.DatasetUtils

Allocates the color table array within a new planar Dataset (one table per plane).

initialize() - Method in class net.imagej.legacy.IJ1Helper

initialize() - Method in class net.imagej.legacy.LegacyService

insertColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumn(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertColumns(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRow(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

insertRows(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

install(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

installed() - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptCloseAllWindows() - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptDragAndDropFile(File) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptFileOpen(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptImageWindowClose(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptKeyPressed(KeyEvent) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpen(String, int, boolean) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpenImage(String, int) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptOpenRecent(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

interceptRunPlugIn(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks

IntTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable

IrregularPolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps a PolygonRoi of type Roi.POLYLINE or Roi.FREELINE with a non zero width as a RealMaskRealInterval.

IrregularPolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

Creates a RealMaskRealInterval which wraps the given Roi.

isActive() - Method in class net.imagej.legacy.LegacyService

Gets whether this LegacyService is fully operational, linked to the ImageJ 1.x singleton instance.

isBatchMode() - Method in class net.imagej.legacy.LegacyCommandline

isCompatible(UserInterface) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

isCompatible(UserInterface) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

isDisposing() - Method in class net.imagej.legacy.IJ1Helper

Whether we are in the process of forcibly shutting down ImageJ1.

isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

isEmpty() - Method in class net.imagej.legacy.convert.TableListWrapper

isImagePlus(Object) - Method in class net.imagej.legacy.IJ1Helper

Returns true if the object is an instance of ImagePlus.

isImagePlus(Class<?>) - Method in class net.imagej.legacy.IJ1Helper

Returns true if the class is assignable to ImagePlus.

isInitialized() - Method in class net.imagej.legacy.LegacyService

Returns true if this LegacyService has been initialized already and false if not.

isLegacyMode() - Method in class net.imagej.legacy.DefaultLegacyHooks

isLegacyMode() - Method in class net.imagej.legacy.LegacyService

States whether we're running in legacy ImageJ 1.x mode.

isLossy() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

isLossy() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

isMacintosh() - Method in class net.imagej.legacy.IJ1Helper

isMacro() - Method in class net.imagej.legacy.IJ1Helper

Determines whether we're running inside a macro right now.

isMouseoverEnabled() - Method in class net.imagej.legacy.search.SearchOptions

isProcessingEvents() - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

isRMIEnabled() - Method in class net.imagej.legacy.IJ1Helper

Determines whether Edit>Options>Misc...

isSciJavaIO() - Method in class net.imagej.legacy.ImageJ2Options

isSearchBarEnabled() - Method in class net.imagej.legacy.search.SearchOptions

isSearchBarFull() - Method in class net.imagej.legacy.search.SearchOptions

isSearchPanelClosedByDefaultAction() - Method in class net.imagej.legacy.search.SearchOptions

isSearchPanelEmbedded() - Method in class net.imagej.legacy.search.SearchOptions

isShortcutOverridden() - Method in class net.imagej.legacy.search.SearchOptions

isSyncEnabled() - Method in class net.imagej.legacy.ImageJ2Options

Gets whether to synchronize ImageJ 1.x and ImageJ2 data structures.

isSyncEnabled() - Method in class net.imagej.legacy.LegacyService

States whether ImageJ1 and ImageJ2 data structures should be kept in sync.

isTaskMonitorBarEnabled() - Method in class net.imagej.legacy.task.TaskMonitorOptions

isTaskMonitorEstimateTime() - Method in class net.imagej.legacy.task.TaskMonitorOptions

isVisible() - Method in class net.imagej.legacy.IJ1Helper

isVisible() - Method in class net.imagej.legacy.ui.LegacyUI

isWindowClosed(Frame) - Method in class net.imagej.legacy.IJ1Helper

iterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

iterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

iterator() - Method in class net.imagej.legacy.convert.TableListWrapper

L

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

lastIndexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

LegacyAdapter - Interface in net.imagej.legacy.ui

Marker interface for classes that adapt between legacy ImageJ and IJ2 constructs.

LegacyAppConfiguration - Interface in net.imagej.legacy.plugin

Interface for configuring the legacy application appearance.

LegacyApplicationFrame - Class in net.imagej.legacy.ui

LegacyAdapter between the ApplicationFrame class and active ij.ImageJ.

LegacyApplicationFrame(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyApplicationFrame

LegacyAutoImporter - Class in net.imagej.legacy.plugin

LegacyAutoImporter() - Constructor for class net.imagej.legacy.plugin.LegacyAutoImporter

LegacyCodeRunner - Class in net.imagej.legacy

Runs the given ImageJ 1.x PlugIn class.

LegacyCodeRunner() - Constructor for class net.imagej.legacy.LegacyCodeRunner

LegacyCommand - Class in net.imagej.legacy.command

Executes an ImageJ v1.x command.

LegacyCommand() - Constructor for class net.imagej.legacy.command.LegacyCommand

LegacyCommandFinder - Class in net.imagej.legacy.command

Discovers legacy ImageJ 1.x commands.

LegacyCommandFinder(LegacyService) - Constructor for class net.imagej.legacy.command.LegacyCommandFinder

LegacyCommandInfo - Class in net.imagej.legacy.command

Metadata about an ImageJ 1.x PlugIn.

LegacyCommandInfo(MenuPath, String, String, ClassLoader) - Constructor for class net.imagej.legacy.command.LegacyCommandInfo

LegacyCommandline - Class in net.imagej.legacy

Handles the following ImageJ 1.x commands, as per ImageJ's documentation: "file-name" Opens a file
Example 1: blobs.tif
Example 2: /Users/wayne/images/blobs.tif
Example 3: e81*.tif
-macro path [arg] Runs a macro or script (JavaScript, BeanShell or Python), passing an optional string argument, which the macro or script can be retrieve using the getArgument() function.

LegacyCommandline() - Constructor for class net.imagej.legacy.LegacyCommandline

LegacyCommandline.Batch - Class in net.imagej.legacy

Implements -batch path [arg] and -batch-no-exit path [arg].

LegacyCommandline.Debug - Class in net.imagej.legacy

Implements -debug.

LegacyCommandline.Eval - Class in net.imagej.legacy

Implements -eval "macro code".

LegacyCommandline.Filename - Class in net.imagej.legacy

Handles "file-name".

LegacyCommandline.IJPath - Class in net.imagej.legacy

Implements -ijpath path.

LegacyCommandline.Macro - Class in net.imagej.legacy

Implements -macro path [arg].

LegacyCommandline.Port - Class in net.imagej.legacy

Implements -port<n>.

LegacyCommandline.Run - Class in net.imagej.legacy

Implements -run command.

LegacyDialogPrompt - Class in net.imagej.legacy.ui

LegacyAdapter implementation for adapting between DialogPrompt and the ImageJ1 dialog prompts.

LegacyDialogPrompt(LegacyService, String, String, DialogPrompt.OptionType) - Constructor for class net.imagej.legacy.ui.LegacyDialogPrompt

LegacyDisplayViewer - Interface in net.imagej.legacy.display

Marker interface to indicate display viewers that do not need a display window, as ImageJ1 will be handling the display.

LegacyEditor - Interface in net.imagej.legacy.plugin

A minimal interface for the editor to use instead of ImageJ 1.x' limited AWT-based one.

legacyEnabled() - Method in class net.imagej.legacy.convert.AbstractLegacyConverter

LegacyHelpSearchActionFactory - Class in net.imagej.legacy.search

Search action for viewing the documentation of a LegacyCommand.

LegacyHelpSearchActionFactory() - Constructor for class net.imagej.legacy.search.LegacyHelpSearchActionFactory

LegacyImageDisplayService - Class in net.imagej.legacy.display

HACK - this whole service exists as a hack to facilitate running commands that require a Dataset without requiring ImageJ2 synchronization to be enabled via Edit>Options>ImageJ2.

LegacyImageDisplayService() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayService

LegacyImageDisplayViewer - Class in net.imagej.legacy.display

Default ImageDisplayViewer implementation for viewing the IJ2 Dataset and Data outputs via an ImagePlus.

LegacyImageDisplayViewer() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayViewer

LegacyImageJApp - Class in net.imagej.legacy

Application metadata and operations for ImageJ 1.x.

LegacyImageJApp() - Constructor for class net.imagej.legacy.LegacyImageJApp

LegacyImageMap - Class in net.imagej.legacy

An image map between ImageJ ImagePlus objects and ImageJ2 ImageDisplays.

LegacyImageMap(LegacyService) - Constructor for class net.imagej.legacy.LegacyImageMap

LegacyInitializer - Class in net.imagej.legacy.plugin

The ij1-patcher defaults to running this class whenever a new PluginClassLoader is initialized.

LegacyInitializer() - Constructor for class net.imagej.legacy.plugin.LegacyInitializer

LegacyInputHarvester - Class in net.imagej.legacy.ui

Trivial Legacy extension of the SwingInputHarvester.

LegacyInputHarvester() - Constructor for class net.imagej.legacy.ui.LegacyInputHarvester

LegacyOpener - Interface in net.imagej.legacy.plugin

Extension point for actions to be executed after Help>Refresh Menus.

LegacyPostRefreshMenus - Interface in net.imagej.legacy.plugin

Extension point for actions to be executed after Help>Refresh Menus.

legacyService - Variable in class net.imagej.legacy.convert.AbstractLegacyConverter

legacyService - Variable in class net.imagej.legacy.LegacyCommandline

LegacyService - Class in net.imagej.legacy

Service for working with legacy ImageJ 1.x.

LegacyService() - Constructor for class net.imagej.legacy.LegacyService

LegacySourceSearchActionFactory - Class in net.imagej.legacy.search

Search action for viewing the source code of a SciJava module.

LegacySourceSearchActionFactory() - Constructor for class net.imagej.legacy.search.LegacySourceSearchActionFactory

LegacyStatusBar - Class in net.imagej.legacy.ui

Adapter StatusBar implementation that delegates to legacy ImageJ methods.

LegacyStatusBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyStatusBar

LegacyToolBar - Class in net.imagej.legacy.ui

LegacyAdapter implementation for adapting between ToolBar and the ImageJ1 tool bar.

LegacyToolBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyToolBar

LegacyUI - Class in net.imagej.legacy.ui

Swing-based UserInterface implementation for working between ImageJ2 (net.imagej.*) and ImageJ1 (ij.*) applications.

LegacyUI() - Constructor for class net.imagej.legacy.ui.LegacyUI

LegacyUtils - Class in net.imagej.legacy.translate

A bag of static methods used throughout the translation layer

LegacyUtils() - Constructor for class net.imagej.legacy.translate.LegacyUtils

LineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts a Line to a Line.

LineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.LineToIJLineConverter

LineWrapper - Class in net.imagej.legacy.convert.roi.line

A Line with an associated WritableLine.

LineWrapper(WritableLine) - Constructor for class net.imagej.legacy.convert.roi.line.LineWrapper

listIterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

listIterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

listIterator() - Method in class net.imagej.legacy.convert.TableListWrapper

listIterator(int) - Method in class net.imagej.legacy.convert.TableListWrapper

loadLegacyClass() - Method in class net.imagej.legacy.command.LegacyCommandInfo

Gets the class backing this legacy command, loading it as needed.

log(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

log - Variable in class net.imagej.legacy.LegacyCommandline

log() - Method in class net.imagej.legacy.LegacyService

Gets the LogService associated with this LegacyService.

LongTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable

lookupDisplay(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Gets the ImageDisplay corresponding to the given ImagePlus, or null if there is no existing table entry.

lookupImagePlus(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Gets the ImagePlus corresponding to the given ImageDisplay, or null if there is no existing table entry.

M

Macro() - Constructor for class net.imagej.legacy.LegacyCommandline.Macro

MacroExtensionAutoCompletionPlugin - Interface in net.imagej.legacy.plugin

MacroExtensionAutoCompletionPlugin This interface must be implemented in order to extend the auto completion list of the Script editor.

MacroExtensionAutoCompletionService - Class in net.imagej.legacy.plugin

This service manages extensions to the auto-complete pull down of the script editor.

MacroExtensionAutoCompletionService() - Constructor for class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService

MacroLanguageSupportPlugin - Class in net.imagej.legacy.plugin

LanguageSupportPlugin making basic auto-completion available for IJ macro scripts.

MacroLanguageSupportPlugin() - Constructor for class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

MacroPreprocessor - Class in net.imagej.legacy.plugin

Populates the module's input values, when the command is invoked from an ImageJ 1.x macro.

MacroPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroPreprocessor

MacroRecorderExcludedInputs - Class in net.imagej.legacy.plugin

Globally accessible data structure that stores, for each Module instance, the set of "pre-resolved" module inputs.

MacroRecorderPostprocessor - Class in net.imagej.legacy.plugin

Registers the module's final input values with ImageJ 1.x's macro recorder.

MacroRecorderPostprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPostprocessor

MacroRecorderPreprocessor - Class in net.imagej.legacy.plugin

Remembers which inputs are resolved extremely early in the preprocessing chain.

MacroRecorderPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPreprocessor

Macros - Class in net.imagej.legacy

Static utility methods for working with ImageJ 1.x macros via its call function.

main(String...) - Static method in class net.imagej.legacy.plugin.LegacyAutoImporter

makeFilePrivate(String) - Method in class net.imagej.legacy.SingleInstance

MaskPredicateUnwrappers - Class in net.imagej.legacy.convert.roi

Converters which unwrap wrapped MaskPredicates.

MaskPredicateUnwrappers.WrapperToWritableBoxConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableBoxs.

MaskPredicateUnwrappers.WrapperToWritableEllipsoid - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableEllipsoids.

MaskPredicateUnwrappers.WrapperToWritableLine - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableLines.

MaskPredicateUnwrappers.WrapperToWritablePointMask - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePointMasks.

MaskPredicateUnwrappers.WrapperToWritablePolygon2D - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePolygon2Ds.

MaskPredicateUnwrappers.WrapperToWritablePolyline - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritablePolylines.

MaskPredicateUnwrappers.WrapperToWritableRealPointCollection - Class in net.imagej.legacy.convert.roi

Unwraps wrapped WritableRealPointCollections.

MaskPredicateWrapper<M extends net.imglib2.roi.MaskPredicate<?>> - Interface in net.imagej.legacy.convert.roi

ImageJ 1.x Rois with associated MaskPredicate.

max(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

max(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

max(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

MetadataHarmonizer - Class in net.imagej.legacy.translate

Synchronizes metadata bidirectionally between a Dataset and an ImagePlus.

MetadataHarmonizer() - Constructor for class net.imagej.legacy.translate.MetadataHarmonizer

min(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

min(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

min(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

N

NAME - Static variable in class net.imagej.legacy.LegacyImageJApp

NAME - Static variable in class net.imagej.legacy.ui.LegacyUI

NameHarmonizer - Class in net.imagej.legacy.translate

This harmonizer keeps ImagePlus and Display names synchronized

NameHarmonizer() - Constructor for class net.imagej.legacy.translate.NameHarmonizer

net.imagej.legacy - package net.imagej.legacy

net.imagej.legacy.command - package net.imagej.legacy.command

net.imagej.legacy.convert - package net.imagej.legacy.convert

net.imagej.legacy.convert.roi - package net.imagej.legacy.convert.roi

net.imagej.legacy.convert.roi.box - package net.imagej.legacy.convert.roi.box

net.imagej.legacy.convert.roi.ellipsoid - package net.imagej.legacy.convert.roi.ellipsoid

net.imagej.legacy.convert.roi.line - package net.imagej.legacy.convert.roi.line

net.imagej.legacy.convert.roi.point - package net.imagej.legacy.convert.roi.point

net.imagej.legacy.convert.roi.polygon2d - package net.imagej.legacy.convert.roi.polygon2d

net.imagej.legacy.convert.roi.polyline - package net.imagej.legacy.convert.roi.polyline

net.imagej.legacy.display - package net.imagej.legacy.display

net.imagej.legacy.plugin - package net.imagej.legacy.plugin

net.imagej.legacy.search - package net.imagej.legacy.search

net.imagej.legacy.task - package net.imagej.legacy.task

net.imagej.legacy.translate - package net.imagej.legacy.translate

net.imagej.legacy.ui - package net.imagej.legacy.ui

numDimensions() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

numDimensions() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

numDimensions() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper

numVertices() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

O

open(File) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor

open(String, int, boolean) - Method in class net.imagej.legacy.plugin.DefaultLegacyOpener

open(File) - Method in interface net.imagej.legacy.plugin.LegacyEditor

open(String, int, boolean) - Method in interface net.imagej.legacy.plugin.LegacyOpener

Optionally override opening resources via legacy hooks.

openAndAddToRecent(File) - Static method in class net.imagej.legacy.IJ1Helper

Opens an image and adds the path to the File>Open Recent menu.

openDialog(String) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' OpenDialog

openDialog(String, File) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' OpenDialog

openImage(String) - Method in class net.imagej.legacy.IJ1Helper

Opens an image using ImageJ 1.x.

openImage(String, boolean) - Method in class net.imagej.legacy.IJ1Helper

Opens an image using ImageJ 1.x.

openInEditor(String) - Method in class net.imagej.legacy.DefaultLegacyHooks

Opens the given path in the registered legacy editor, if any.

openPathDirectly(String) - Method in class net.imagej.legacy.IJ1Helper

Opens a path using ImageJ 1.x, bypassing the (javassisted) IJ utility class.

openScriptInTextEditor(ScriptInfo) - Method in class net.imagej.legacy.LegacyService

OpenTemplateSearchActionFactory - Class in net.imagej.legacy.search

OpenTemplateSearchActionFactory() - Constructor for class net.imagej.legacy.search.OpenTemplateSearchActionFactory

OptionsSynchronizer - Class in net.imagej.legacy

The options synchronizer bidirectionally synchronizes modern ImageJ options with legacy ImageJ settings and preferences.

OptionsSynchronizer(OptionsService) - Constructor for class net.imagej.legacy.OptionsSynchronizer

OvalRoiToEllipsoidConverter - Class in net.imagej.legacy.convert.roi.ellipsoid

Converts an ImageJ 1.x OvalRoi to an ImgLib2 Ellipsoid.

OvalRoiToEllipsoidConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

OvalRoiWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid

Wraps an ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.

OvalRoiWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.

OvalRoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.

OvalRoiWrapper(OvalRoi) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

Wraps the given ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.

OverlayHarmonizer - Class in net.imagej.legacy.translate

Deprecated.

OverlayHarmonizer(Context) - Constructor for class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

OverlayPreprocessor - Class in net.imagej.legacy.plugin

Injects the Overlay of the current ImagePlus when a single Overlay is declared as a parameter.

OverlayPreprocessor() - Constructor for class net.imagej.legacy.plugin.OverlayPreprocessor

OverlayToROITreeConverter - Class in net.imagej.legacy.convert

Converts an Overlay to a ROITree.

OverlayToROITreeConverter() - Constructor for class net.imagej.legacy.convert.OverlayToROITreeConverter

P

PointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a PointMask to a PointRoi.

PointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter

PointMaskWrapper - Class in net.imagej.legacy.convert.roi.point

A PointRoi with an associated WritablePointMask.

PointMaskWrapper(WritablePointMask) - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskWrapper

PointRoiToRealPointCollectionConverter - Class in net.imagej.legacy.convert.roi.point

Converts an ImageJ 1.x PointRoi to an ImgLib2 RealPointCollection.

PointRoiToRealPointCollectionConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

PointRoiWrapper - Class in net.imagej.legacy.convert.roi.point

Wraps an ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.

PointRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(FloatPolygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(Polygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(int, int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(double, double) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.

PointRoiWrapper(PointRoi) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Wraps the given ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.

points() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

Polygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts a Polygon2D to a PolygonRoi of type POLYGON.

Polygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter

Polygon2DWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

A PolygonRoi with an associated WritablePolygon2D.

Polygon2DWrapper(WritablePolygon2D) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper

PolygonRoiToPolygon2DConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts an ImageJ 1.x PolygonRoi of type: Roi.POLYGON Roi.TRACED_ROI Roi.FREEROI to an ImgLib2 Polygon2D.

PolygonRoiToPolygon2DConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

PolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

PolygonRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.

PolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

PolylineRoiToPolylineConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an ImageJ 1.x PolygonRoi to an ImgLib2 Polyline.

PolylineRoiToPolylineConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

PolylineRoiToRealMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an ImageJ 1.x PolygonRoi to an ImgLib2 RealMaskRealInterval.

PolylineRoiToRealMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

PolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

PolylineRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.

PolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

PolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an Polyline to an PolygonRoi of type POLYLINE.

PolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter

PolylineWrapper - Class in net.imagej.legacy.convert.roi.polyline

A PolygonRoi with an associated WritablePolyline.

PolylineWrapper(WritablePolyline) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineWrapper

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.AbstractImagePlusLegacyConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter

populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImgPlusToImagePlusConverter

Port() - Constructor for class net.imagej.legacy.LegacyCommandline.Port

PositionHarmonizer - Class in net.imagej.legacy.translate

This class is responsible for harmonizing slider position values (and active plane position) between legacy ImageJ and modern ImageJ.

PositionHarmonizer() - Constructor for class net.imagej.legacy.translate.PositionHarmonizer

prefs() - Method in class net.imagej.legacy.LegacyImageJApp

preinit() - Static method in class net.imagej.legacy.LegacyService

Deprecated.

use LegacyInjector.preinit() instead

process(Module) - Method in class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPostprocessor

process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.OverlayPreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.ResultsTablePreprocessor

process(Module) - Method in class net.imagej.legacy.plugin.RoiManagerPreprocessor

prompt() - Method in class net.imagej.legacy.ui.LegacyDialogPrompt

put(String, Object) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine

Q

quit() - Method in class net.imagej.legacy.LegacyImageJApp

quitting() - Method in class net.imagej.legacy.IJ1Helper

R

RealMaskRealIntervalToImageRoiConverter - Class in net.imagej.legacy.convert.roi

Converts a RealMaskRealInterval to an ImageRoi.

RealMaskRealIntervalToImageRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter

realMax(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

realMax(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

realMin(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

RealPointCollectionToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a RealPointCollection to a PointRoi.

RealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter

RealPointCollectionWrapper<L extends net.imglib2.RealLocalizable & net.imglib2.RealPositionable> - Class in net.imagej.legacy.convert.roi.point

A PointRoi with an associated WritableRealPointCollection.

RealPointCollectionWrapper(WritableRealPointCollection<L>, Supplier<L>) - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper

recordOption(String, String) - Method in class net.imagej.legacy.IJ1Helper

Records an option in ImageJ 1.x's macro recorder, safely.

registerDataset(Dataset) - Method in class net.imagej.legacy.LegacyImageMap

This method takes a provided Dataset, converts it to an ImagePlus, stores the new ImagePlus in the Dataset 's properties uner LegacyImageMap.IMP_KEY and finally creates an ImageDisplay using the provided Dataset.

registerDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Ensures that the given ImageDisplay has a corresponding ImagePlus.

registerDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.registerDisplay(ImageDisplay) but mappings will go in legacy maps if createLegacyMappings is true.

registerImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

registerLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Ensures that the given ImagePlus has a corresponding ImageDisplay.

registerType(ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Remembers the type of an ImagePlus.

remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

remove(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

remove(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

remove(Object) - Method in class net.imagej.legacy.convert.TableListWrapper

remove(int) - Method in class net.imagej.legacy.convert.TableListWrapper

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper

removeColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removePoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

If there is no ImagePlus associated with the wrapped PointRoi, then an UnsupportedOperationException will always be thrown.

removeRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.

removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.

renameColumn(String, String) - Method in class net.imagej.legacy.convert.TableWrapper

requiresEDT() - Method in class net.imagej.legacy.ui.LegacyUI

reset() - Method in class net.imagej.legacy.convert.TableWrapper

restoreLocation() - Method in class net.imagej.legacy.ui.LegacyUI

ResultsTableColumnWrapper - Class in net.imagej.legacy.convert

Wraps a ResultsTable column as a GenericColumn.

ResultsTableColumnWrapper(ResultsTable, int) - Constructor for class net.imagej.legacy.convert.ResultsTableColumnWrapper

ResultsTableHarmonizer - Class in net.imagej.legacy.translate

Harmonizes data between legacy ImageJ and modern ImageJ ResultsTables

ResultsTableHarmonizer(DisplayService) - Constructor for class net.imagej.legacy.translate.ResultsTableHarmonizer

ResultsTablePreprocessor - Class in net.imagej.legacy.plugin

Injects the singleton ResultsTable when a single ResultsTable is declared as a parameter.

ResultsTablePreprocessor() - Constructor for class net.imagej.legacy.plugin.ResultsTablePreprocessor

ResultsTableToGenericTableConverter - Class in net.imagej.legacy.convert

Converts a ResultsTable to a GenericTable.

ResultsTableToGenericTableConverter() - Constructor for class net.imagej.legacy.convert.ResultsTableToGenericTableConverter

ResultsTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable

ResultsTableUnwrapper - Class in net.imagej.legacy.convert

Converts a ResultsTableWrapper to a ResultsTable via unwrapping.

ResultsTableUnwrapper() - Constructor for class net.imagej.legacy.convert.ResultsTableUnwrapper

ResultsTableWrapper - Class in net.imagej.legacy.convert

Wraps a ResultsTable as a GenericTable.

ResultsTableWrapper(ResultsTable) - Constructor for class net.imagej.legacy.convert.ResultsTableWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper

retrieve(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs

Obtains the cached set of excluded inputs for a particular module instance, clearing it from the data structure.

RoiManagerPreprocessor - Class in net.imagej.legacy.plugin

Injects the singleton RoiManager when a single RoiManager is declared as a parameter.

RoiManagerPreprocessor() - Constructor for class net.imagej.legacy.plugin.RoiManagerPreprocessor

Rois - Class in net.imagej.legacy.convert.roi

Utility class for ROI wrappers and converters.

Rois() - Constructor for class net.imagej.legacy.convert.roi.Rois

RoiToBoxConverter - Class in net.imagej.legacy.convert.roi.box

Converts an ImageJ 1.x Roi of type Roi.RECTANGLE with corner diameter = 0 to an ImgLib2 Box.

RoiToBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

RoiToMaskIntervalConverter - Class in net.imagej.legacy.convert.roi

Converts an ImageJ 1.x Roi to an Imglib2 MaskInterval.

RoiToMaskIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

ROITreeToOverlayConverter - Class in net.imagej.legacy.convert

Converts a ROITree to an Overlay.

ROITreeToOverlayConverter() - Constructor for class net.imagej.legacy.convert.ROITreeToOverlayConverter

RoiUnwrappers - Class in net.imagej.legacy.convert.roi

Converters which unwrap wrapped ImageJ 1.x Rois.

RoiUnwrappers.WrapperToEllipseRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped EllipseRois.

RoiUnwrappers.WrapperToLineConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped Lines.

RoiUnwrappers.WrapperToOvalRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped OvalRois.

RoiUnwrappers.WrapperToPointRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped PointRoi.

RoiUnwrappers.WrapperToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped PolygonRoi.

RoiUnwrappers.WrapperToRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped Rois.

RoiUnwrappers.WrapperToRotatedRectRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped RotatedRectRoi.

RoiUnwrappers.WrapperToShapeRoiConverter - Class in net.imagej.legacy.convert.roi

Unwraps wrapped ShapeRois.

RoiWrapper - Class in net.imagej.legacy.convert.roi.box

Wraps an ImageJ 1.x Roi as an ImgLib2 Box.

RoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper

Creates an ImageJ 1.x Roi and then wraps it as an ImgLib2 Box.

RoiWrapper(Roi) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper

Wraps an ImageJ 1.x Roi as an ImgLib2 Box.

run() - Method in class net.imagej.legacy.command.LegacyCommand

run(String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified command.

run(Object, Object...) - Method in class net.imagej.legacy.LegacyCodeRunner

run(Object, Map<String, Object>) - Method in class net.imagej.legacy.LegacyCodeRunner

Run() - Constructor for class net.imagej.legacy.LegacyCommandline.Run

run() - Method in class net.imagej.legacy.plugin.GetPath

run() - Method in class net.imagej.legacy.plugin.LegacyInitializer

run() - Method in class net.imagej.legacy.search.FocusSearchBar

run() - Method in class net.imagej.legacy.search.SearchOptions

run() - Method in class net.imagej.legacy.task.TaskMonitorOptions

runAfterRefreshMenus() - Method in class net.imagej.legacy.DefaultLegacyHooks

runLegacyCommand(String, String) - Method in class net.imagej.legacy.LegacyService

Runs a legacy command programmatically.

runLegacyCompatibleCommand(String) - Method in class net.imagej.legacy.LegacyService

Runs the legacy compatible command with the given identifier.

runMacro(String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified macro.

runMacroFile(String, String) - Method in class net.imagej.legacy.IJ1Helper

Evaluates the specified macro.

S

saveDialog(String, File, String) - Method in class net.imagej.legacy.IJ1Helper

Uses ImageJ 1.x' SaveDialog

saveInterpreter() - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine

Called by ImageJ 1.x at the beginning of each macro execution.

saveLocation() - Method in class net.imagej.legacy.ui.LegacyUI

SearchBarHacker - Class in net.imagej.legacy.search

Hacks the ImageJ search bar into place.

SearchBarHacker(Context) - Constructor for class net.imagej.legacy.search.SearchBarHacker

SearchOptions - Class in net.imagej.legacy.search

Options relevant to the ImageJ search bar.

SearchOptions() - Constructor for class net.imagej.legacy.search.SearchOptions

semiAxisLength(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

sendArguments(String[]) - Method in class net.imagej.legacy.SingleInstance

set(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

Sets the value at the given index.

set(int, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Sets the value at the given row column.

set(String, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Sets the value at the given row column.

set(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

Returns null, since the previous column needs to be overwritten with the new column.

set(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper

setActiveImage(String) - Static method in class net.imagej.legacy.Macros

setActiveModule(Module) - Static method in class net.imagej.legacy.Macros

setCheckNameDuplicates(boolean) - Method in class net.imagej.legacy.IJ1Helper

Sets WindowManager checkForDuplicateName field.

setColumnCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setColumnHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setDebugMode(boolean) - Method in class net.imagej.legacy.IJ1Helper

Enables or disables ImageJ 1.x' debug mode.

setDefaultDirectory(File) - Method in class net.imagej.legacy.IJ1Helper

Sets OpenDialog's default directory

setDefaultHeadings() - Method in class net.imagej.legacy.convert.TableWrapper

setDimensions(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setHeader(String) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

setHeading(int, String) - Method in class net.imagej.legacy.convert.TableWrapper

setIJ1Helper(IJ1Helper) - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

setKeyDown(int) - Method in class net.imagej.legacy.IJ1Helper

setKeyUp(int) - Method in class net.imagej.legacy.IJ1Helper

setLabel(String, int) - Method in class net.imagej.legacy.convert.TableWrapper

setLegacyImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer

setLocation(int, int) - Method in class net.imagej.legacy.IJ1Helper

setLocation(int, int) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

setModernImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer

setOptions(String) - Method in class net.imagej.legacy.IJ1Helper

Delegates to ImageJ 1.x' Macro.setOptions(String) function.

setOutput(String, String) - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine

Deprecated.

Macros no longer call this method. Nor should you.

setOverlays(List<Overlay>, Overlay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Assigns a list of Overlays to the given ImagePlus.

setProcessingEvents(boolean) - Method in class net.imagej.legacy.LegacyService

This is not part of the public API.

setProgress(int, int) - Method in class net.imagej.legacy.IJ1Helper

setProgress(int, int) - Method in class net.imagej.legacy.ui.LegacyStatusBar

setRowCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setRowHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

setSemiAxisLength(int, double) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

This will always throw an UnsupportedOperationException.

setSideLength(int, double) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

This will always throw an UnsupportedOperationException.

setSize(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

setStatus(String) - Method in class net.imagej.legacy.IJ1Helper

setStatus(String) - Method in class net.imagej.legacy.ui.LegacyStatusBar

setValue(int, int, double) - Method in class net.imagej.legacy.convert.TableWrapper

setValue(int, int, String) - Method in class net.imagej.legacy.convert.TableWrapper

setVisible(boolean) - Method in class net.imagej.legacy.IJ1Helper

setVisible(boolean) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame

ShapeRoiToMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi

Converts an ImageJ 1.x ShapeRoi to an ImgLib2 RealMaskRealInterval.

ShapeRoiToMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

ShapeRoiWrapper - Class in net.imagej.legacy.convert.roi

Wraps an ImageJ 1.x ShapeRoi as an ImgLib2 RealMaskRealInterval.

ShapeRoiWrapper(ShapeRoi) - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiWrapper

shiftKeyDown() - Method in class net.imagej.legacy.IJ1Helper

Ask ImageJ 1.x whether it thinks whether the Shift key is held down.

ShortTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable

show() - Method in class net.imagej.legacy.ui.LegacyUI

show(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI

showContextMenu(String, Display<?>, int, int) - Method in class net.imagej.legacy.ui.LegacyUI

showMessage(String, String) - Method in class net.imagej.legacy.IJ1Helper

showMessageWithCancel(String, String) - Method in class net.imagej.legacy.IJ1Helper

shutDown() - Static method in class net.imagej.legacy.SingleInstance

Clean up remote objects

sideLength(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

SingleInstance - Class in net.imagej.legacy

This class tries to contact another instance on the same machine, started by the current user.

SingleInstance(int, LogService, IJ1Helper) - Constructor for class net.imagej.legacy.SingleInstance

SingleInstanceArgument - Class in net.imagej.legacy

Handles arguments relating to the single instance listener feature of ImageJ 1.x.

SingleInstanceArgument() - Constructor for class net.imagej.legacy.SingleInstanceArgument

size() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

size() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

size() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

size() - Method in class net.imagej.legacy.convert.TableListWrapper

startRecording(String) - Method in class net.imagej.legacy.IJ1Helper

Begins recording of a command.

status() - Method in class net.imagej.legacy.LegacyService

Gets the StatusService associated with this LegacyService.

StringToDatasetConverter - Class in net.imagej.legacy.convert

Converts a string that matches an ImagePlus title or ID to Dataset.

StringToDatasetConverter() - Constructor for class net.imagej.legacy.convert.StringToDatasetConverter

StringToImagePlusConverter - Class in net.imagej.legacy.convert

Converts a string to the corresponding ImagePlus object.

StringToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.StringToImagePlusConverter

subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

subList(int, int) - Method in class net.imagej.legacy.convert.TableListWrapper

subscribeEvents(Context) - Static method in class net.imagej.legacy.IJ1Helper

supportedType(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter

supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter

supportedType(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter

supportedType(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter

supportedType(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter

supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter

supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter

supportedType(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter

supports(Object) - Method in class net.imagej.legacy.LegacyCodeRunner

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port

supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run

supports(SearchResult) - Method in class net.imagej.legacy.search.LegacyHelpSearchActionFactory

supports(SearchResult) - Method in class net.imagej.legacy.search.LegacySourceSearchActionFactory

supports(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory

supports(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument

syncActiveImage(ImageDisplay) - Method in class net.imagej.legacy.IJ1Helper

syncActiveImage() - Method in class net.imagej.legacy.LegacyService

Ensures that the currently active ImagePlus matches the currently active ImageDisplay.

synchronize() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper

synchronize() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper

Modify the associated MaskPredicate to match the "state" of this Roi.

synchronize() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper

synchronize() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper

synchronize() - Method in class net.imagej.legacy.convert.TableListWrapper

Synchronizes this and the source {@code List

T

TableListWrapper - Class in net.imagej.legacy.convert

TableListWrapper(List<Table<?, ?>>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableListWrapper

TableToResultsTableConverters - Class in net.imagej.legacy.convert

Converters which convert Table to ResultsTable.

TableToResultsTableConverters.AbstractTableToResultsTableConverter<A extends org.scijava.table.Table<?,?>> - Class in net.imagej.legacy.convert

Abstract base class for converting Table to ResultsTable.

TableToResultsTableConverters.ByteTableToResultsTable - Class in net.imagej.legacy.convert

Converts a ByteTable to a ResultsTable.

TableToResultsTableConverters.FloatTableToResultsTable - Class in net.imagej.legacy.convert

Converts a FloatTable to a ResultsTable.

TableToResultsTableConverters.GenericTableToResultsTable - Class in net.imagej.legacy.convert

Converts a GenericTable to a ResultsTable.

TableToResultsTableConverters.IntTableToResultsTable - Class in net.imagej.legacy.convert

Converts a IntTable to a ResultsTable.

TableToResultsTableConverters.LongTableToResultsTable - Class in net.imagej.legacy.convert

Converts a LongTable to a ResultsTable.

TableToResultsTableConverters.ResultsTableToResultsTable - Class in net.imagej.legacy.convert

Converts a DoubleTable to a ResultsTable.

TableToResultsTableConverters.ShortTableToResultsTable - Class in net.imagej.legacy.convert

Converts a ShortTable to a ResultsTable.

TableUnwrapper - Class in net.imagej.legacy.convert

Converts a TableWrapper to a Table, by unwrapping it.

TableUnwrapper() - Constructor for class net.imagej.legacy.convert.TableUnwrapper

TableWrapper - Class in net.imagej.legacy.convert

Wraps an Table as a ResultsTable.

TableWrapper(Table<?, ?>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableWrapper

TaskMonitorButtonHacker - Class in net.imagej.legacy.task

Hacks the ImageJ task monitor bar into place, see SwingTaskMonitorComponent

TaskMonitorButtonHacker(Context) - Constructor for class net.imagej.legacy.task.TaskMonitorButtonHacker

TaskMonitorOptions - Class in net.imagej.legacy.task

Options relevant to the ImageJ task monitor bar.

TaskMonitorOptions() - Constructor for class net.imagej.legacy.task.TaskMonitorOptions

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper

In an attempt to be consistent with ImageJ 1.x Roi.contains(int, int), only some of the edges are considered "contained" by this rectangle.

test(Localizable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

Since PolygonRoi.contains(int, int) uses the "pnpoly" algorithm for real space polygons, so does this implementation.

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

Since PolygonRoi.contains(int, int) uses the "pnpoly" algorithm for real space polygons, so does this implementation.

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper

This includes some additional points near the vertices of the polyline.

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper

toArray() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

toArray(T[]) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper

toArray() - Method in class net.imagej.legacy.convert.ResultsTableWrapper

toArray(A[]) - Method in class net.imagej.legacy.convert.ResultsTableWrapper

toArray() - Method in class net.imagej.legacy.convert.TableListWrapper

toArray(T[]) - Method in class net.imagej.legacy.convert.TableListWrapper

toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyImageMap

toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyService

Switches to/from running legacy ImageJ 1.x mode.

toggleLegacyMode(boolean, boolean) - Method in class net.imagej.legacy.LegacyService

toString() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle

U

uiService() - Method in class net.imagej.legacy.LegacyService

uninstall(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin

UnmodifiablePolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d

Wraps an ImageJ 1.x PolygonRoi of type Roi.FREEROI or Roi.TRACED_ROI as an unmodifiable ImgLib2 Polygon2D.

UnmodifiablePolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.

UnmodifiablePolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline

Wraps an ImageJ 1.x PolygonRoi of type Roi.FREELINE and Roi.ANGLE as an unmodifiable ImgLib2 Polyline.

UnmodifiablePolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.

unregisterDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap

Removes the mapping associated with the given ImageDisplay.

unregisterDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.unregisterDisplay(ImageDisplay), with an optional toggle to delete the associated ImagePlus.

unregisterImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks

unregisterLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap

Removes the mapping associated with the given ImagePlus.

unregisterLegacyImage(ImagePlus, boolean) - Method in class net.imagej.legacy.LegacyImageMap

As LegacyImageMap.unregisterLegacyImage(ImagePlus), with an optional toggle to delete the given ImagePlus.

unsupported(String) - Static method in class net.imagej.legacy.convert.roi.Rois

Throws UnsupportedOperationException with the given method name.

update(int, ImagePlus, Roi) - Method in class net.imagej.legacy.convert.TableWrapper

updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer

Sets the Dataset's number of composite channels to display simultaneously based on an input ImagePlus's makeup.

updateDataset(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer

updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer

Sets a Dataset's metadata to match a given ImagePlus.

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer

Sets the ColorTables of the active view of an modern ImageJ ImageDisplay from the LUTs of a given ImagePlus or CompositeImage.

updateDisplay(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Changes the data within a ImageDisplay to match data in an ImagePlus.

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer

Sets the name of the Display to the title of the given ImagePlus.

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Updates the given ImageDisplay to contain Overlays corresponding to all the given ImagePlus's Rois (both the active Roi and the Rois stored in ImageJ 1.x's current Overlay).

updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer

Updates the given ImageDisplay's position to match that of its paired ImagePlus.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer

Sets LUTs of an ImagePlus or CompositeImage.

updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer

updateLegacyImage(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer

updateLegacyImage(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer

Changes the data within an ImagePlus to match data in a ImageDisplay.

updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer

Sets an ImagePlus' metadata to match a given Dataset.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer

Sets the title of the ImagePlus to the name of the given Display.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer

Deprecated.

Updates the given ImagePlus's Roi and Overlay to match the modern ImageJ Overlays being visualized in the given ImageDisplay.

updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer

Updates the given ImagePlus's position to match that of its paired ImageDisplay.

updateLegacyImageJSettingsFromModernImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer

Updates legacy ImageJ settings and preferences to reflect values set in modern ImageJ dialogs.

updateModernImageJSettingsFromLegacyImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer

Updates modern ImageJ options dialog settings to reflect values set by legacy ImageJ plugins.

updateRecentMenu(String) - Method in class net.imagej.legacy.IJ1Helper

updateTitle() - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

updateTitle() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

V

vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper

vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper

view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer

view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer

W

WrapperToEllipseRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter

WrapperToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter

WrapperToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter

WrapperToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter

WrapperToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter

WrapperToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter

WrapperToRotatedRectRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter

WrapperToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter

WrapperToWritableBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter

WrapperToWritableEllipsoid() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid

WrapperToWritableLine() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine

WrapperToWritablePointMask() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask

WrapperToWritablePolygon2D() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D

WrapperToWritablePolyline() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline

WrapperToWritableRealPointCollection() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection

WritableBoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box

Converts a WritableBox to a Roi.

WritableBoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter

WritableEllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid

Converts an Ellipsoid to an OvalRoi.

WritableEllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter

WritableLineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line

Converts a WritableLine to a Line.

WritableLineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter

WritablePointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point

Converts a WritablePointMask to a PointRoi.

WritablePointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter

WritablePolygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d

Converts a WritablePolygon2D to a PolygonRoi of type POLYGON.

WritablePolygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter

WritablePolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline

Converts an WritablePolyline to an PolygonRoi of type POLYLINE.

WritablePolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter

WritableRealPointCollectionToPointRoiConverter<L extends net.imglib2.RealLocalizable & net.imglib2.RealPositionable> - Class in net.imagej.legacy.convert.roi.point

Converts a WritableRealPointCollection to a PointRoi.

WritableRealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter

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