Uses of Class
io.scif.img.SCIFIOImgPlus

Packages that use SCIFIOImgPlus

Package	Description
io.scif.img	Provides SCIFIO-based classes for working with ImgPlus from the imglib2 library.

Uses of SCIFIOImgPlus in io.scif.img

Methods in io.scif.img that return SCIFIOImgPlus

Modifier and Type	Method and Description
SCIFIOImgPlus<T>	SCIFIOImgPlus.copy()
<T> SCIFIOImgPlus<T>	ImgUtilityService.makeSCIFIOImgPlus(net.imglib2.img.Img<T> img) Convenience method for wrapping an Img as a SCIFIOImgPlus .
<T> SCIFIOImgPlus<T>	DefaultImgUtilityService.makeSCIFIOImgPlus(net.imglib2.img.Img<T> img)
static SCIFIOImgPlus<?>	IO.open(org.scijava.io.location.Location source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.open(Location, ImgFactory).
static SCIFIOImgPlus<?>	IO.open(org.scijava.io.location.Location source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(org.scijava.io.location.Location source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(org.scijava.io.location.Location source, T type, SCIFIOConfig config)
static SCIFIOImgPlus<?>	IO.open(Reader reader, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> SCIFIOImgPlus<T>	IO.open(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(Reader reader, T type, SCIFIOConfig config)
static SCIFIOImgPlus<?>	IO.open(String source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(String source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.open(String, ImgFactory).
static SCIFIOImgPlus<?>	IO.open(String source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(String source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.open(String source, T type, SCIFIOConfig config)
static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>	IO.openDouble(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed DoubleType.
static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>	IO.openDouble(String source)
static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>	IO.openFloat(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed FloatType .
static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>	IO.openFloat(String source)
SCIFIOImgPlus<?>	ImgOpener.openImg(Reader reader, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(Reader, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(Reader, Object, SCIFIOConfig) or ImgOpener.openImgs(Reader, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use IO.open(Reader, RealType, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(Reader reader, T type, SCIFIOConfig config) Deprecated. Use IO.open(Reader, RealType, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(Reader reader, T type, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(Reader, Object, SCIFIOConfig).
SCIFIOImgPlus<?>	ImgOpener.openImg(String source) Deprecated. Use ImgOpener.openImgs(String).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory) Deprecated. Use IO.open(String, ImgFactory).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory) Deprecated. Use ImgOpener.openImgs(String, ImgFactory).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use IO.open(String, ImgFactory, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(String, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.open(String, ImgFactory).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use ImgOpener.openImgs(String, ImgFactory) or ImgOpener.openImgs(String, RealType).
static SCIFIOImgPlus<?>	IO.openImg(String source, SCIFIOConfig config) Deprecated. Use IO.open(String, SCIFIOConfig).
SCIFIOImgPlus<?>	ImgOpener.openImg(String source, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(String, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(String source, T type) Deprecated. Use IO.open(String, RealType).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(String source, T type) Deprecated. Use ImgOpener.openImgs(String, RealType).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	IO.openImg(String source, T type, SCIFIOConfig config) Deprecated. Use IO.open(String, RealType, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	ImgOpener.openImg(String source, T type, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(String, RealType, SCIFIOConfig).
static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>	IO.openUnsignedByte(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.
static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>	IO.openUnsignedByte(String source)

Methods in io.scif.img that return types with arguments of type SCIFIOImgPlus

Modifier and Type	Method and Description
static List<SCIFIOImgPlus<?>>	IO.openAll(org.scijava.io.location.Location source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.openAll(Location, ImgFactory).
static List<SCIFIOImgPlus<?>>	IO.openAll(org.scijava.io.location.Location source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(org.scijava.io.location.Location source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(org.scijava.io.location.Location source, T type, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(Reader reader, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static List<SCIFIOImgPlus<?>>	IO.openAll(Reader reader, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(Reader reader, T type, SCIFIOConfig config)
static List<SCIFIOImgPlus<?>>	IO.openAll(String source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.openAll(String, ImgFactory).
static List<SCIFIOImgPlus<?>>	IO.openAll(String source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(String source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openAll(String source, T type, SCIFIOConfig config)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	IO.openAllDouble(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed DoubleType.
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	IO.openAllDouble(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	IO.openAllFloat(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed FloatType .
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	IO.openAllFloat(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	IO.openAllUnsignedByte(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	IO.openAllUnsignedByte(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	IO.openDoubleImgs(String source) Deprecated. Use IO.openAllDouble(String).
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	IO.openFloatImgs(String source) Deprecated. Use IO.openAllFloat(String).
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(org.scijava.io.location.Location source) Reads in images from the given source.
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory) Reads in images from the given source.
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Reads in images from the given source.
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(org.scijava.io.location.Location source, SCIFIOConfig config) Reads in images from the given source.
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(org.scijava.io.location.Location source, T type) Reads in images from the given source.
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(org.scijava.io.location.Location source, T type, SCIFIOConfig config) Reads in images from the given source.
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(Reader reader) Reads in images using the given Reader.
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(Reader reader, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Reads in images using the given Reader.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(Reader reader, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use IO.openAll(Reader, ImgFactory, SCIFIOConfig).
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(Reader reader, SCIFIOConfig config) Reads in images using the given Reader.
<T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use ImgOpener.openImgs(Reader, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use IO.openAll(Reader, RealType, ImgFactory, SCIFIOConfig).
<T> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(Reader reader, T type, SCIFIOConfig config) Reads in images using the given Reader.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(Reader reader, T type, SCIFIOConfig config) Deprecated. Use IO.openAll(Reader, RealType, SCIFIOConfig).
static List<SCIFIOImgPlus<?>>	IO.openImgs(String source) Deprecated. Use IO.openAll(String).
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(String source) Reads in images from the given source.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory) Deprecated. Use IO.openAll(String, ImgFactory).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory) Reads in images from the given source.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use IO.openAll(String, ImgFactory, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Reads in images from the given source.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use IO.openAll(String, ImgFactory).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use ImgOpener.openImgs(String, ImgFactory).
static List<SCIFIOImgPlus<?>>	IO.openImgs(String source, SCIFIOConfig config) Deprecated. Use IO.openAll(String, SCIFIOConfig).
List<SCIFIOImgPlus<?>>	ImgOpener.openImgs(String source, SCIFIOConfig config) Reads in images from the given source.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(String source, T type) Deprecated. Use IO.openAll(String, RealType).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(String source, T type) Reads in images from the given source.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	IO.openImgs(String source, T type, SCIFIOConfig config) Deprecated. Use IO.openAll(String, RealType, SCIFIOConfig).
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	ImgOpener.openImgs(String source, T type, SCIFIOConfig config) Reads in images from the given source.
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	IO.openUnsignedByteImgs(String source) Deprecated. Use IO.openAllUnsignedByte(String).

Methods in io.scif.img with parameters of type SCIFIOImgPlus

Modifier and Type	Method and Description
static void	IO.save(org.scijava.io.location.Location dest, SCIFIOImgPlus<?> imgPlus, int imageIndex)
static void	IO.save(String dest, SCIFIOImgPlus<?> imgPlus, int imageIndex)
static void	IO.save(Writer writer, SCIFIOImgPlus<?> imgPlus, int imageIndex)
Metadata	ImgSaver.saveImg(org.scijava.io.location.Location id, SCIFIOImgPlus<?> img, int imageIndex) Location id provided.
Metadata	ImgSaver.saveImg(org.scijava.io.location.Location id, SCIFIOImgPlus<?> img, int imageIndex, SCIFIOConfig config) As ImgSaver.saveImg(Location, SCIFIOImgPlus, int) with configuration options.
static void	IO.saveImg(String dest, SCIFIOImgPlus<?> imgPlus, int imageIndex) Deprecated. Use IO.save(String, SCIFIOImgPlus, int).
Metadata	ImgSaver.saveImg(String destination, SCIFIOImgPlus<?> img, int imageIndex) Location id provided.
Metadata	ImgSaver.saveImg(String destination, SCIFIOImgPlus<?> img, int imageIndex, SCIFIOConfig config) As ImgSaver.saveImg(Location, SCIFIOImgPlus, int) with configuration options.
static void	IO.saveImg(Writer writer, SCIFIOImgPlus<?> imgPlus, int imageIndex) Deprecated. Use IO.save(Writer, SCIFIOImgPlus, int).
void	ImgSaver.saveImg(Writer w, SCIFIOImgPlus<?> img, int imageIndex) Writer provided.
void	ImgSaver.saveImg(Writer w, SCIFIOImgPlus<?> img, int imageIndex, SCIFIOConfig config) As ImgSaver.saveImg(Writer, SCIFIOImgPlus, int), with configuration options.