io.scif.img

Class IO

java.lang.Object

io.scif.img.IO

public final class IO
extends Object

A static utility class for easy access to ImgSaver and ImgOpener methods. Also includes type-convenience methods for quickly opening various image types.

NB: No exceptions are thrown by any methods in this class. Instead they are all caught, logged, and null is returned.

NB: Each of these methods occurs in its own Context

Author:

Mark Hiner

Constructor Summary

Constructors

Constructor and Description
IO()

Method Summary

Modifier and Type	Method and Description
static SCIFIOImgPlus<?>	open(org.scijava.io.location.Location source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use open(Location, ImgFactory).
static SCIFIOImgPlus<?>	open(org.scijava.io.location.Location source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(org.scijava.io.location.Location source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(org.scijava.io.location.Location source, T type, SCIFIOConfig config)
static SCIFIOImgPlus<?>	open(Reader reader, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> SCIFIOImgPlus<T>	open(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(Reader reader, T type, SCIFIOConfig config)
static SCIFIOImgPlus<?>	open(String source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(String source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use open(String, ImgFactory).
static SCIFIOImgPlus<?>	open(String source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(String source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	open(String source, T type, SCIFIOConfig config)
static List<SCIFIOImgPlus<?>>	openAll(org.scijava.io.location.Location source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(org.scijava.io.location.Location source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use openAll(Location, ImgFactory).
static List<SCIFIOImgPlus<?>>	openAll(org.scijava.io.location.Location source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(org.scijava.io.location.Location source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(org.scijava.io.location.Location source, T type, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>>	openAll(Reader reader, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static List<SCIFIOImgPlus<?>>	openAll(Reader reader, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>>	openAll(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(Reader reader, T type, SCIFIOConfig config)
static List<SCIFIOImgPlus<?>>	openAll(String source)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use openAll(String, ImgFactory).
static List<SCIFIOImgPlus<?>>	openAll(String source, SCIFIOConfig config)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(String source, T type)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openAll(String source, T type, SCIFIOConfig config)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	openAllDouble(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed DoubleType.
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	openAllDouble(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	openAllFloat(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed FloatType .
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	openAllFloat(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	openAllUnsignedByte(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	openAllUnsignedByte(String source)
static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>	openDouble(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed DoubleType.
static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>	openDouble(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>>	openDoubleImgs(String source) Deprecated. Use openAllDouble(String).
static ImgOpener	opener() Creates a new ImgOpener.
static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>	openFloat(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed FloatType .
static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>	openFloat(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>>	openFloatImgs(String source) Deprecated. Use openAllFloat(String).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use open(Reader, RealType, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(Reader reader, T type, SCIFIOConfig config) Deprecated. Use open(Reader, RealType, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory) Deprecated. Use open(String, ImgFactory).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use open(String, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use open(String, ImgFactory).
static SCIFIOImgPlus<?>	openImg(String source, SCIFIOConfig config) Deprecated. Use open(String, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(String source, T type) Deprecated. Use open(String, RealType).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T>	openImg(String source, T type, SCIFIOConfig config) Deprecated. Use open(String, RealType, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(Reader reader, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use openAll(Reader, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(Reader reader, T type, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use openAll(Reader, RealType, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(Reader reader, T type, SCIFIOConfig config) Deprecated. Use openAll(Reader, RealType, SCIFIOConfig).
static List<SCIFIOImgPlus<?>>	openImgs(String source) Deprecated. Use openAll(String).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory) Deprecated. Use openAll(String, ImgFactory).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, SCIFIOConfig config) Deprecated. Use openAll(String, ImgFactory, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(String source, net.imglib2.img.ImgFactory<T> imgFactory, T type) Deprecated. Use openAll(String, ImgFactory).
static List<SCIFIOImgPlus<?>>	openImgs(String source, SCIFIOConfig config) Deprecated. Use openAll(String, SCIFIOConfig).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(String source, T type) Deprecated. Use openAll(String, RealType).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>>	openImgs(String source, T type, SCIFIOConfig config) Deprecated. Use openAll(String, RealType, SCIFIOConfig).
static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>	openUnsignedByte(org.scijava.io.location.Location source) As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.
static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>	openUnsignedByte(String source)
static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>>	openUnsignedByteImgs(String source) Deprecated. Use openAllUnsignedByte(String).
static void	save(org.scijava.io.location.Location dest, net.imglib2.img.Img<?> img)
static void	save(org.scijava.io.location.Location dest, SCIFIOImgPlus<?> imgPlus, int imageIndex)
static void	save(String dest, net.imglib2.img.Img<?> img)
static void	save(String dest, SCIFIOImgPlus<?> imgPlus, int imageIndex)
static void	save(Writer writer, net.imglib2.img.Img<?> img)
static void	save(Writer writer, SCIFIOImgPlus<?> imgPlus, int imageIndex)
static void	saveImg(String dest, net.imglib2.img.Img<?> img) Deprecated. Use save(String, Img).
static void	saveImg(String dest, SCIFIOImgPlus<?> imgPlus, int imageIndex) Deprecated. Use save(String, SCIFIOImgPlus, int).
static void	saveImg(Writer writer, net.imglib2.img.Img<?> img) Deprecated. Use save(Writer, Img).
static void	saveImg(Writer writer, SCIFIOImgPlus<?> imgPlus, int imageIndex) Deprecated. Use save(Writer, SCIFIOImgPlus, int).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IO

public IO()

Method Detail

open

public static SCIFIOImgPlus<?> open(org.scijava.io.location.Location source)

See Also:

ImgOpener.openImgs(Location)

open

public static SCIFIOImgPlus<?> open(String source)

See Also:

open(Location)

openFloat

public static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType> openFloat(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed FloatType .

openFloat

public static SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType> openFloat(String source)

See Also:

openFloat(Location)

openDouble

public static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType> openDouble(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed DoubleType.

openDouble

public static SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType> openDouble(String source)

See Also:

openAllDouble(Location)

openUnsignedByte

public static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType> openUnsignedByte(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.

openUnsignedByte

public static SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType> openUnsignedByte(String source)

See Also:

openUnsignedByte(Location)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(org.scijava.io.location.Location source,
                                                                                                                      T type)

See Also:

ImgOpener.openImgs(Location)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(String source,
                                                                                                                      T type)

open

public static SCIFIOImgPlus<?> open(String source,
                                    SCIFIOConfig config)

See Also:

open(Location, SCIFIOConfig)

open

public static SCIFIOImgPlus<?> open(org.scijava.io.location.Location source,
                                    SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(org.scijava.io.location.Location source,
                                                                                                                      T type,
                                                                                                                      SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(String source,
                                                                                                                      T type,
                                                                                                                      SCIFIOConfig config)

See Also:

open(Location, RealType, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(String source,
                                                                                                                      net.imglib2.img.ImgFactory<T> imgFactory)

See Also:

open(Location, ImgFactory)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(org.scijava.io.location.Location source,
                                                                                                                      net.imglib2.img.ImgFactory<T> imgFactory)

See Also:

ImgOpener.openImgs(Location, ImgFactory)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(String source,
                                                                                                                      net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                      SCIFIOConfig config)

See Also:

open(Location, ImgFactory, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(org.scijava.io.location.Location source,
                                                                                                                      net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                      SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, ImgFactory, SCIFIOConfig)

open

public static SCIFIOImgPlus<?> open(Reader reader,
                                    SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(Reader reader,
                                                                                                                      T type,
                                                                                                                      SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, SCIFIOConfig)

open

public static <T extends net.imglib2.type.numeric.RealType<T>> SCIFIOImgPlus<T> open(Reader reader,
                                                                                     T type,
                                                                                     net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                     SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, ImgFactory, SCIFIOConfig)

openAll

public static List<SCIFIOImgPlus<?>> openAll(org.scijava.io.location.Location source)

See Also:

ImgOpener.openImgs(Location)

openAll

public static List<SCIFIOImgPlus<?>> openAll(String source)

See Also:

openAll(Location)

openAllFloat

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>> openAllFloat(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed FloatType .

openAllFloat

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>> openAllFloat(String source)

See Also:

openAllFloat(Location)

openAllDouble

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>> openAllDouble(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed DoubleType.

openAllDouble

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>> openAllDouble(String source)

See Also:

openAllDouble(Location)

openAllUnsignedByte

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>> openAllUnsignedByte(org.scijava.io.location.Location source)

As ImgOpener.openImgs(Location) with a guaranteed UnsignedByteType.

openAllUnsignedByte

public static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>> openAllUnsignedByte(String source)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(org.scijava.io.location.Location source,
                                                                                                                               T type)

See Also:

ImgOpener.openImgs(Location)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(String source,
                                                                                                                               T type)

openAll

public static List<SCIFIOImgPlus<?>> openAll(String source,
                                             SCIFIOConfig config)

See Also:

openAll(Location, SCIFIOConfig)

openAll

public static List<SCIFIOImgPlus<?>> openAll(org.scijava.io.location.Location source,
                                             SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(String source,
                                                                                                                               T type,
                                                                                                                               SCIFIOConfig config)

See Also:

openAll(Location, RealType, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(org.scijava.io.location.Location source,
                                                                                                                               T type,
                                                                                                                               SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(String source,
                                                                                                                               net.imglib2.img.ImgFactory<T> imgFactory)

See Also:

openAll(Location, ImgFactory)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(org.scijava.io.location.Location source,
                                                                                                                               net.imglib2.img.ImgFactory<T> imgFactory)

See Also:

ImgOpener.openImgs(Location, ImgFactory)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(String source,
                                                                                                                               net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                               SCIFIOConfig config)

See Also:

openAll(Location, ImgFactory, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(org.scijava.io.location.Location source,
                                                                                                                               net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                               SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Location, ImgFactory, SCIFIOConfig)

openAll

public static List<SCIFIOImgPlus<?>> openAll(Reader reader,
                                             SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(Reader reader,
                                                                                                                               T type,
                                                                                                                               SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>> openAll(Reader reader,
                                                                                              net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                              SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, ImgFactory, SCIFIOConfig)

openAll

public static <T extends net.imglib2.type.numeric.RealType<T>> List<SCIFIOImgPlus<T>> openAll(Reader reader,
                                                                                              T type,
                                                                                              net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                              SCIFIOConfig config)

See Also:

ImgOpener.openImgs(Reader, ImgFactory, SCIFIOConfig)

save

public static void save(String dest,
                        net.imglib2.img.Img<?> img)

See Also:

save(Location, Img)

save

public static void save(org.scijava.io.location.Location dest,
                        net.imglib2.img.Img<?> img)

See Also:

ImgSaver.saveImg(Location, Img)

save

public static void save(String dest,
                        SCIFIOImgPlus<?> imgPlus,
                        int imageIndex)

See Also:

save(Location, SCIFIOImgPlus, int)

save

public static void save(org.scijava.io.location.Location dest,
                        SCIFIOImgPlus<?> imgPlus,
                        int imageIndex)

See Also:

ImgSaver.saveImg(Location, SCIFIOImgPlus, int)

save

public static void save(Writer writer,
                        net.imglib2.img.Img<?> img)

See Also:

ImgSaver.saveImg(Writer, Img)

save

public static void save(Writer writer,
                        SCIFIOImgPlus<?> imgPlus,
                        int imageIndex)

See Also:

ImgSaver.saveImg(Writer, SCIFIOImgPlus, int)

opener

public static ImgOpener opener()

Creates a new ImgOpener. The first time this method runs, an additional Context is created and the logService is cached for future logging.

Returns:

A new ImgOpener instance with its own Context

open

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(String source,
                                                                                                                                  net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                  T type)

Deprecated. Use open(String, ImgFactory).

open

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> open(org.scijava.io.location.Location source,
                                                                                                                                  net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                  T type)

Deprecated. Use open(Location, ImgFactory).

openAll

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(String source,
                                                                                                                                           net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                           T type)

Deprecated. Use openAll(String, ImgFactory).

openAll

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openAll(org.scijava.io.location.Location source,
                                                                                                                                           net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                           T type)

Deprecated. Use openAll(Location, ImgFactory).

openImgs

@Deprecated
public static List<SCIFIOImgPlus<?>> openImgs(String source)

Deprecated. Use openAll(String).

openImgs

@Deprecated
public static List<SCIFIOImgPlus<?>> openImgs(String source,
                                                          SCIFIOConfig config)

Deprecated. Use openAll(String, SCIFIOConfig).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(String source,
                                                                                                                                            net.imglib2.img.ImgFactory<T> imgFactory)

Deprecated. Use openAll(String, ImgFactory).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(String source,
                                                                                                                                            net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                            SCIFIOConfig config)

Deprecated. Use openAll(String, ImgFactory, SCIFIOConfig).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(String source,
                                                                                                                                            net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                            T type)

Deprecated. Use openAll(String, ImgFactory).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(String source,
                                                                                                                                            T type,
                                                                                                                                            SCIFIOConfig config)

Deprecated. Use openAll(String, RealType, SCIFIOConfig).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(String source,
                                                                                                                                            T type)

Deprecated. Use openAll(String, RealType).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(Reader reader,
                                                                                                                                            T type,
                                                                                                                                            SCIFIOConfig config)

Deprecated. Use openAll(Reader, RealType, SCIFIOConfig).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(Reader reader,
                                                                                                                                            net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                            SCIFIOConfig config)

Deprecated. Use openAll(Reader, ImgFactory, SCIFIOConfig).

openImgs

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> List<SCIFIOImgPlus<T>> openImgs(Reader reader,
                                                                                                                                            T type,
                                                                                                                                            net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                            SCIFIOConfig config)

Deprecated. Use openAll(Reader, RealType, ImgFactory, SCIFIOConfig).

openFloatImgs

@Deprecated
public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.FloatType>> openFloatImgs(String source)

Deprecated. Use openAllFloat(String).

openDoubleImgs

@Deprecated
public static List<SCIFIOImgPlus<net.imglib2.type.numeric.real.DoubleType>> openDoubleImgs(String source)

Deprecated. Use openAllDouble(String).

openUnsignedByteImgs

@Deprecated
public static List<SCIFIOImgPlus<net.imglib2.type.numeric.integer.UnsignedByteType>> openUnsignedByteImgs(String source)

Deprecated. Use openAllUnsignedByte(String).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(String source,
                                                                                                                                     T type)

Deprecated. Use open(String, RealType).

openImg

@Deprecated
public static SCIFIOImgPlus<?> openImg(String source,
                                                   SCIFIOConfig config)

Deprecated. Use open(String, SCIFIOConfig).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(String source,
                                                                                                                                     T type,
                                                                                                                                     SCIFIOConfig config)

Deprecated. Use open(String, RealType, SCIFIOConfig).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(String source,
                                                                                                                                     net.imglib2.img.ImgFactory<T> imgFactory)

Deprecated. Use open(String, ImgFactory).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(String source,
                                                                                                                                     net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                     SCIFIOConfig config)
                                                                                                                              throws ImgIOException

Deprecated. Use open(String, ImgFactory, SCIFIOConfig).

Throws:

ImgIOException

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(String source,
                                                                                                                                     net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                     T type)

Deprecated. Use open(String, ImgFactory).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(Reader reader,
                                                                                                                                     T type,
                                                                                                                                     SCIFIOConfig config)

Deprecated. Use open(Reader, RealType, SCIFIOConfig).

openImg

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> SCIFIOImgPlus<T> openImg(Reader reader,
                                                                                                                                     T type,
                                                                                                                                     net.imglib2.img.ImgFactory<T> imgFactory,
                                                                                                                                     SCIFIOConfig config)

Deprecated. Use open(Reader, RealType, ImgFactory, SCIFIOConfig).

saveImg

@Deprecated
public static void saveImg(String dest,
                                       net.imglib2.img.Img<?> img)

Deprecated. Use save(String, Img).

saveImg

@Deprecated
public static void saveImg(String dest,
                                       SCIFIOImgPlus<?> imgPlus,
                                       int imageIndex)

Deprecated. Use save(String, SCIFIOImgPlus, int).

saveImg

@Deprecated
public static void saveImg(Writer writer,
                                       net.imglib2.img.Img<?> img)

Deprecated. Use save(Writer, Img).

saveImg

public static void saveImg(Writer writer,
                           SCIFIOImgPlus<?> imgPlus,
                           int imageIndex)

Deprecated. Use save(Writer, SCIFIOImgPlus, int).