| Package | Description |
|---|---|
| io.scif.img |
Provides SCIFIO-based classes for working with
ImgPlus
from the imglib2 library. |
| Modifier and Type | Method and Description |
|---|---|
int |
ImgUtilityService.getImageCount(org.scijava.io.location.Location source) |
int |
DefaultImgUtilityService.getImageCount(org.scijava.io.location.Location source) |
int |
ImgUtilityService.makeType(Object type)
Converts ImgLib2 Type object to SCIFIO pixel type.
|
int |
DefaultImgUtilityService.makeType(Object type)
Converts ImgLib2 Type object to SCIFIO pixel type.
|
SCIFIOImgPlus<?> |
ImgOpener.openImg(Reader reader,
SCIFIOConfig config)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T>> |
ImgOpener.openImg(Reader reader,
T type,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(Reader reader,
T type,
SCIFIOConfig config)
Deprecated.
|
SCIFIOImgPlus<?> |
ImgOpener.openImg(String source)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(String source,
net.imglib2.img.ImgFactory<T> imgFactory)
Deprecated.
|
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
IO.openImg(String source,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(String source,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(String source,
net.imglib2.img.ImgFactory<T> imgFactory,
T type)
Deprecated.
|
SCIFIOImgPlus<?> |
ImgOpener.openImg(String source,
SCIFIOConfig config)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(String source,
T type)
Deprecated.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImg(String source,
T type,
SCIFIOConfig config)
Deprecated.
|
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(org.scijava.io.location.Location source)
Reads in images from the given source.
|
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(org.scijava.io.location.Location source,
net.imglib2.img.ImgFactory<T> imgFactory)
Reads in images from the given source.
|
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(org.scijava.io.location.Location source,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Reads in images from the given source.
|
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(org.scijava.io.location.Location source,
SCIFIOConfig config)
Reads in images from the given source.
|
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(org.scijava.io.location.Location source,
T type)
Reads in images from the given source.
|
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(org.scijava.io.location.Location source,
T type,
SCIFIOConfig config)
Reads in images from the given source.
|
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(Reader reader)
Reads in images using the given
Reader. |
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(Reader reader,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Reads in images using the given
Reader. |
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(Reader reader,
SCIFIOConfig config)
Reads in images using the given
Reader. |
<T extends net.imglib2.type.numeric.RealType<T>> |
ImgOpener.openImgs(Reader reader,
T type,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Deprecated.
|
<T> List<SCIFIOImgPlus<T>> |
ImgOpener.openImgs(Reader reader,
T type,
SCIFIOConfig config)
Reads in images using the given
Reader. |
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(String source)
Reads in images from the given source.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImgs(String source,
net.imglib2.img.ImgFactory<T> imgFactory)
Reads in images from the given source.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImgs(String source,
net.imglib2.img.ImgFactory<T> imgFactory,
SCIFIOConfig config)
Reads in images from the given source.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImgs(String source,
net.imglib2.img.ImgFactory<T> imgFactory,
T type)
Deprecated.
|
List<SCIFIOImgPlus<?>> |
ImgOpener.openImgs(String source,
SCIFIOConfig config)
Reads in images from the given source.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImgs(String source,
T type)
Reads in images from the given source.
|
<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
ImgOpener.openImgs(String source,
T type,
SCIFIOConfig config)
Reads in images from the given source.
|
Metadata |
ImgSaver.saveImg(org.scijava.io.location.Location id,
net.imglib2.img.Img<?> img)
Entry point for saving an
ImgPlus. |
Metadata |
ImgSaver.saveImg(org.scijava.io.location.Location id,
net.imglib2.img.Img<?> img,
SCIFIOConfig config)
As
ImgSaver.saveImg(Location, Img) with configuration options. |
Metadata |
ImgSaver.saveImg(org.scijava.io.location.Location id,
SCIFIOImgPlus<?> img,
int imageIndex)
Location id provided.
|
Metadata |
ImgSaver.saveImg(org.scijava.io.location.Location id,
SCIFIOImgPlus<?> img,
int imageIndex,
SCIFIOConfig config)
As
ImgSaver.saveImg(Location, SCIFIOImgPlus, int) with configuration
options. |
Metadata |
ImgSaver.saveImg(String destination,
net.imglib2.img.Img<?> img)
Entry point for saving an
ImgPlus. |
Metadata |
ImgSaver.saveImg(String destination,
net.imglib2.img.Img<?> img,
SCIFIOConfig config)
As
ImgSaver.saveImg(Location, Img) with configuration options. |
Metadata |
ImgSaver.saveImg(String destination,
SCIFIOImgPlus<?> img,
int imageIndex)
Location id provided.
|
Metadata |
ImgSaver.saveImg(String destination,
SCIFIOImgPlus<?> img,
int imageIndex,
SCIFIOConfig config)
As
ImgSaver.saveImg(Location, SCIFIOImgPlus, int) with configuration
options. |
void |
ImgSaver.saveImg(Writer w,
net.imglib2.img.Img<?> img)
Writer and Img provided |
void |
ImgSaver.saveImg(Writer w,
net.imglib2.img.Img<?> img,
SCIFIOConfig config)
As
ImgSaver.saveImg(Writer, Img), with configuration options. |
void |
ImgSaver.saveImg(Writer w,
SCIFIOImgPlus<?> img,
int imageIndex)
Writer provided. |
void |
ImgSaver.saveImg(Writer w,
SCIFIOImgPlus<?> img,
int imageIndex,
SCIFIOConfig config)
As
ImgSaver.saveImg(Writer, SCIFIOImgPlus, int), with configuration
options. |
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