Uses of Interface
io.scif.Plane

Packages that use Plane

Package	Description
io.scif	Provides the interfaces and default implementations for the components of SCIFIO, and the context for instantiating these components.
io.scif.filters	Provides wrapping classes for modifying the performance of one or more of a {link io.scif.Format}'s components.
io.scif.formats	Provides Format implementations for all file formats that are supported by default in SCIFIO.
io.scif.formats.qt
io.scif.gui	Provides classes for working with BufferedImage in SCIFIO.

Uses of Plane in io.scif

Subinterfaces of Plane in io.scif

Modifier and Type	Interface and Description
interface	DataPlane<T> Extension of the base Plane interface.

Classes in io.scif that implement Plane

Modifier and Type	Class and Description
class	AbstractPlane<T,P extends DataPlane<T>> Abstract superclass for Plane implementations in SCIFIO.
class	BufferedImagePlane A Plane implementation using a BufferedImage for the underlying data representation.
class	ByteArrayPlane A naive Plane implementation that uses byte[] for its underlying data type.

Methods in io.scif with type parameters of type Plane

Modifier and Type	Method and Description
<P extends Plane> P	Reader.castToTypedPlane(Plane plane) Convenience method for casting Plane implementations to the type associated with this Reader.
<T extends Plane> T	AbstractReader.castToTypedPlane(Plane plane)

Methods in io.scif that return Plane

Modifier and Type	Method and Description
Plane	Reader.createPlane(ImageMetadata meta, net.imglib2.Interval bounds) Creates a blank plane compatible with this reader.
Plane	Reader.createPlane(net.imglib2.Interval bounds) Creates a blank plane compatible with this reader.
Plane	Reader.openPlane(int imageIndex, long planeIndex) Creates a Plane representation of the pixels at the specified indices.
Plane	Reader.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds) Creates a Plane representation of a desired sub-region from the pixels at the specified indices.
Plane	Reader.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config) As Reader.openPlane(int, long, Interval) with configuration options.
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane) Allows a single Plane object to be reused by reference when opening complete planes.
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Allows a single Plane object to be reused by reference when opening sub-regions of planes.
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config) Allows a single Plane object to be reused by reference when opening sub-regions of planes.
Plane	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config) Allows a single Plane object to be reused by reference when opening complete planes.
Plane	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	Reader.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config) As Reader.openPlane(int, long) with configuration options.
Plane	Plane.populate(ImageMetadata meta, net.imglib2.Interval bounds) Populates this planes offsets, dimensions and Metadata.
Plane	Plane.populate(Plane p) Populates this plane by copying the fields of the provided plane
Plane	Reader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane) Reads a raw plane from disk.
Plane	AbstractReader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane)
Plane	Reader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane) Reads a raw plane from disk.
Plane	AbstractReader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane)

Methods in io.scif with parameters of type Plane

Modifier and Type	Method and Description
<P extends Plane> P	Reader.castToTypedPlane(Plane plane) Convenience method for casting Plane implementations to the type associated with this Reader.
<T extends Plane> T	AbstractReader.castToTypedPlane(Plane plane)
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane) Allows a single Plane object to be reused by reference when opening complete planes.
P	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Allows a single Plane object to be reused by reference when opening sub-regions of planes.
P	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config) Allows a single Plane object to be reused by reference when opening sub-regions of planes.
Plane	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	Reader.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config) Allows a single Plane object to be reused by reference when opening complete planes.
Plane	AbstractReader.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
P	AbstractPlane.populate(Plane p)
Plane	Plane.populate(Plane p) Populates this plane by copying the fields of the provided plane
Plane	Reader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane) Reads a raw plane from disk.
Plane	AbstractReader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane)
Plane	Reader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane) Reads a raw plane from disk.
Plane	AbstractReader.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane)
void	AbstractWriter.savePlane(int imageIndex, long planeIndex, Plane plane)
void	Writer.savePlane(int imageIndex, long planeIndex, Plane plane) Saves the provided plane to the specified image and plane index of this Writer's destination image.
void	AbstractWriter.savePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	Writer.savePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Saves the specified tile (sub-region) of the provided plane to the specified image and plane index of this Writer's destination image.
protected abstract void	AbstractWriter.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Helper method invoked by AbstractWriter.savePlane(int, long, io.scif.Plane) to perform actual format- specific output.
protected void	DefaultWriter.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Non-functional savePlane implementation.

Uses of Plane in io.scif.filters

Methods in io.scif.filters with type parameters of type Plane

Modifier and Type	Method and Description
<P extends Plane> P	AbstractReaderFilter.castToTypedPlane(Plane plane)

Methods in io.scif.filters that return Plane

Modifier and Type	Method and Description
Plane	AbstractReaderFilter.createPlane(ImageMetadata meta, net.imglib2.Interval bounds)
Plane	AbstractReaderFilter.createPlane(net.imglib2.Interval bounds)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds)
Plane	FileStitcher.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	FileStitcher.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, SCIFIOConfig config)
Plane	AbstractReaderFilter.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane)
Plane	AbstractReaderFilter.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane)

Methods in io.scif.filters with parameters of type Plane

Modifier and Type	Method and Description
<P extends Plane> P	AbstractReaderFilter.castToTypedPlane(Plane plane)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
Plane	FileStitcher.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds, SCIFIOConfig config)
Plane	ChannelFiller.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	PlaneSeparator.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	MinMaxFilter.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	DimensionSwapper.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	AbstractReaderFilter.openPlane(int imageIndex, long planeIndex, Plane plane, SCIFIOConfig config)
Plane	AbstractReaderFilter.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, int scanlinePad, Plane plane)
Plane	AbstractReaderFilter.readPlane(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> s, int imageIndex, net.imglib2.Interval bounds, Plane plane)

Uses of Plane in io.scif.formats

Methods in io.scif.formats with parameters of type Plane

Modifier and Type	Method and Description
byte[]	JPEG2000Format.Writer.compressBuffer(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds) Compresses the buffer.
void	TIFFFormat.Writer.savePlane(int imageIndex, long planeIndex, Plane plane, IFD ifd, net.imglib2.Interval bounds) Saves the given image to the specified series in the current file.
void	ImageIOFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	JPEG2000Format.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	APNGFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	TIFFFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	EPSFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	AVIFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	ICSFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)

Uses of Plane in io.scif.formats.qt

Methods in io.scif.formats.qt with parameters of type Plane

Modifier and Type	Method and Description
void	NativeQTFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)
void	LegacyQTFormat.Writer.writePlane(int imageIndex, long planeIndex, Plane plane, net.imglib2.Interval bounds)

Uses of Plane in io.scif.gui

Methods in io.scif.gui that return Plane

Modifier and Type	Method and Description
Plane	ImageViewer.getPlane(BufferedImage image)

Methods in io.scif.gui with parameters of type Plane

Modifier and Type	Method and Description
static BufferedImage	AWTImageTools.openImage(Plane plane, byte[] bytes, Reader r, long[] axes, int imageIndex) Creates an image from the given Plane.
static BufferedImage	AWTImageTools.openImage(Plane plane, Reader r, int imageIndex) Creates an image from the given Plane.
static BufferedImage	AWTImageTools.openImage(Plane plane, Reader r, long[] axes, int imageIndex) Creates an image from the given Plane.
static BufferedImage	AWTImageTools.openThumbImage(Plane plane, Reader r, int imageIndex, long[] axes, int thumbSizeX, int thumbSizeY, boolean pad) Creates a thumbnail image from the provided plane, scaling it to the specified thumbnail dimensions.