BurnInRenderer (LOCI Javadocs 0-SNAPSHOT API)

java.lang.Object
- loci.slim.fit.CurveRenderer
- - loci.slim.fit.BurnInRenderer

All Implemented Interfaces:

Runnable, ICurveRenderer
```
public class BurnInRenderer
extends CurveRenderer
```
Curve renderer implementation that delivers increasingly high resolution lifetime image renderings, then continually improves the lifetime image based on RCSE minimization thereafter.

Author:

Eric Kjellman, Curtis Rueden

Field Summary

Fields
Modifier and Type Field and Description

protected ICurveFitter[][] currentCurves

protected double[][] image

protected boolean[][] mask

protected int maskCount
- Fields inherited from class loci.slim.fit.CurveRenderer
  alive, currentIterations, currentX, currentY, currProgress, curveData, maxIterations, maxProgress, maxRCSE, numCols, numExponentials, numRows, subsampleLevel, totalIterations

Fields
Modifier and Type	Field and Description
`protected ICurveFitter[][]`	`currentCurves`
`protected double[][]`	`image`
`protected boolean[][]`	`mask`
`protected int`	`maskCount`

Constructor Summary

Constructors
Constructor and Description

BurnInRenderer(CurveCollection cc)

Constructors
Constructor and Description
`BurnInRenderer(CurveCollection cc)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double[][]`	`getImage()`
`int`	`getImageX()`
`int`	`getImageY()`
`boolean[][]`	`getMask()`
`int`	`getStallCount()`
`double`	`getTotalRCSE()`
`double`	`getWorstRCSE()`
`void`	`run()`
`void`	`setComponentCount(int numExp)`
`void`	`setMask(boolean[][] mask)`

Methods inherited from class loci.slim.fit.CurveRenderer
getCurrentIterations, getCurrentProgress, getCurrentX, getCurrentY, getCurveCollection, getFixed, getMaxIterations, getMaxProgress, getMaxRCSE, getSubsampleLevel, getTotalIterations, setFixed, setMaxIterations, setMaxRCSE, stop

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - currentCurves
```
protected ICurveFitter[][] currentCurves
```
  - image
```
protected double[][] image
```
  - mask
```
protected boolean[][] mask
```
  - maskCount
```
protected int maskCount
```
- Constructor Detail
  - BurnInRenderer
```
public BurnInRenderer(CurveCollection cc)
```
- Method Detail
  - getStallCount
```
public int getStallCount()
```
  - run
```
public void run()
```
    Specified by:
    
    run in interface Runnable
    
    Specified by:
    
    run in interface ICurveRenderer
    
    Specified by:
    
    run in class CurveRenderer
  - getImage
```
public double[][] getImage()
```
    Specified by:
    
    getImage in interface ICurveRenderer
    
    Specified by:
    
    getImage in class CurveRenderer
  - setComponentCount
```
public void setComponentCount(int numExp)
```
    Specified by:
    
    setComponentCount in interface ICurveRenderer
    
    Overrides:
    
    setComponentCount in class CurveRenderer
  - setMask
```
public void setMask(boolean[][] mask)
```
    Specified by:
    
    setMask in interface ICurveRenderer
    
    Specified by:
    
    setMask in class CurveRenderer
  - getMask
```
public boolean[][] getMask()
```
    Specified by:
    
    getMask in interface ICurveRenderer
    
    Specified by:
    
    getMask in class CurveRenderer
  - getImageX
```
public int getImageX()
```
    Specified by:
    
    getImageX in interface ICurveRenderer
    
    Specified by:
    
    getImageX in class CurveRenderer
  - getImageY
```
public int getImageY()
```
    Specified by:
    
    getImageY in interface ICurveRenderer
    
    Specified by:
    
    getImageY in class CurveRenderer
  - getTotalRCSE
```
public double getTotalRCSE()
```
    Specified by:
    
    getTotalRCSE in interface ICurveRenderer
    
    Specified by:
    
    getTotalRCSE in class CurveRenderer
  - getWorstRCSE
```
public double getWorstRCSE()
```
    Specified by:
    
    getWorstRCSE in interface ICurveRenderer
    
    Specified by:
    
    getWorstRCSE in class CurveRenderer

Class BurnInRenderer

Field Summary

Fields inherited from class loci.slim.fit.CurveRenderer

Constructor Summary

Method Summary

Methods inherited from class loci.slim.fit.CurveRenderer

Methods inherited from class java.lang.Object

Field Detail

currentCurves

image

mask

maskCount

Constructor Detail

BurnInRenderer

Method Detail

getStallCount

run

getImage

setComponentCount

setMask

getMask

getImageX

getImageY

getTotalRCSE

getWorstRCSE