SlimData (LOCI Javadocs 0-SNAPSHOT API)

java.lang.Object
- loci.slim.SlimData

All Implemented Interfaces:

ActionListener, EventListener, CurveListener
```
public class SlimData
extends Object
implements ActionListener, CurveListener
```
Data structure for housing raw experimental data, as well as various derived data such as subsamplings and curve estimates.

Author:

Curtis Rueden

Field Summary

Fields
Modifier and Type	Field and Description
`protected boolean`	`allowCurveFit`
`protected int`	`binRadius`
`protected int`	`channels`
`protected boolean`	`computeFWHMs`
`protected Class`	`curveFitterClass`
`protected CurveCollection[]`	`curves` Per-pixel curve estimates, dimensioned [channels].
`protected int`	`cutBins`
`protected boolean[]`	`cVisible`
`protected int[][][][]`	`data` Actual data values, dimensioned [channel][row][column][bin].
`protected int`	`height`
`protected int`	`maxPeak`
`protected int`	`maxWave`
`protected int`	`minWave`
`protected int`	`numExp`
`protected int`	`timeBins`
`protected float`	`timeRange`
`static String`	`TITLE`
`protected int`	`waveStep`
`protected int`	`width`

Constructor Summary

Constructors
Constructor and Description

SlimData(String id, ProgressMonitor progress)
Extracts data from the given file.

Constructors
Constructor and Description
`SlimData(String id, ProgressMonitor progress)` Extracts data from the given file.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`actionPerformed(ActionEvent e)` Handles OK button press.
`static JTextField`	`addRow(JPanel p, String label, double value, String unit)`
`float`	`binsToPico(float bins)` Converts value in histogram bins to picoseconds.
`void`	`curveChanged(CurveEvent e)` Handles curve collection computation progress.
`static float`	`parse(String s, float last)`
`static int`	`parse(String s, int last)`
`float`	`picoToBins(float pico)` Converts value in picoseconds to histogram bins.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TITLE
```
public static final String TITLE
```
See Also:

Constant Field Values

data
```
protected int[][][][] data
```
Actual data values, dimensioned [channel][row][column][bin].

curves
```
protected CurveCollection[] curves
```
Per-pixel curve estimates, dimensioned [channels].

width
```
protected int width
```

height
```
protected int height
```

channels
```
protected int channels
```

timeBins
```
protected int timeBins
```

timeRange
```
protected float timeRange
```

minWave
```
protected int minWave
```

waveStep
```
protected int waveStep
```

maxWave
```
protected int maxWave
```

numExp
```
protected int numExp
```

curveFitterClass
```
protected Class curveFitterClass
```

allowCurveFit
```
protected boolean allowCurveFit
```

binRadius
```
protected int binRadius
```

cutBins
```
protected int cutBins
```

maxPeak
```
protected int maxPeak
```

computeFWHMs
```
protected boolean computeFWHMs
```

cVisible
```
protected boolean[] cVisible
```

Constructor Detail

SlimData

public SlimData(String id,
                ProgressMonitor progress)
         throws FormatException,
                IOException

Extracts data from the given file.

Throws:: FormatException; IOException

Method Detail

picoToBins
```
public float picoToBins(float pico)
```
Converts value in picoseconds to histogram bins.

binsToPico
```
public float binsToPico(float bins)
```
Converts value in histogram bins to picoseconds.

actionPerformed
```
public void actionPerformed(ActionEvent e)
```
Handles OK button press.

Specified by:

actionPerformed in interface ActionListener

curveChanged
```
public void curveChanged(CurveEvent e)
```
Handles curve collection computation progress.

Specified by:

curveChanged in interface CurveListener

addRow

public static JTextField addRow(JPanel p,
                                String label,
                                double value,
                                String unit)

parse

public static int parse(String s,
                        int last)

parse

public static float parse(String s,
                          float last)

Class SlimData

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

TITLE

data

curves

width

height

channels

timeBins

timeRange

minWave

waveStep

maxWave

numExp

curveFitterClass

allowCurveFit

binRadius

cutBins

maxPeak

computeFWHMs

cVisible

Constructor Detail

SlimData

Method Detail

picoToBins

binsToPico

actionPerformed

curveChanged

addRow

parse

parse