Uses of Interface net.imglib2.outofbounds.OutOfBoundsFactory (ImgLib2 Javadocs 0-SNAPSHOT API)

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Packages that use OutOfBoundsFactory
Package	Description
net.imglib2.algorithm.bspline
net.imglib2.algorithm.fft
net.imglib2.algorithm.fft2
net.imglib2.algorithm.gauss
net.imglib2.algorithm.gradient
net.imglib2.algorithm.interpolation.randomaccess
net.imglib2.algorithm.region.localneighborhood
net.imglib2.labeling
net.imglib2.outofbounds
net.imglib2.realtransform
net.imglib2.view

Uses of OutOfBoundsFactory in net.imglib2.algorithm.bspline

Fields in net.imglib2.algorithm.bspline declared as OutOfBoundsFactory
Modifier and Type	Field and Description
`protected OutOfBoundsFactory<?,?>`	BSplineLazyCoefficientsInterpolatorFactory.`oobFactory`

Constructors in net.imglib2.algorithm.bspline with parameters of type OutOfBoundsFactory
Constructor and Description
`BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T> img, int order, boolean clipping, S coefficientType, int[] blockSize, OutOfBoundsFactory<? extends RealType<?>,?> oobFactory)`
`BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T> img, Interval interval, int order, boolean clipping, S coefficientType, int[] blockSize, OutOfBoundsFactory<? extends RealType<?>,?> oobFactory)` Creates a new `BSplineLazyCoefficientsInterpolatorFactory`.

Uses of OutOfBoundsFactory in net.imglib2.algorithm.fft

Methods in net.imglib2.algorithm.fft that return OutOfBoundsFactory
Modifier and Type	Method and Description
`OutOfBoundsFactory<T,RandomAccessibleInterval<T>>`	FourierTransform.`getCustomOutOfBoundsStrategy()` Deprecated.

Methods in net.imglib2.algorithm.fft with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`static <T extends RealType<T>,S extends ComplexType<S>> Img<S>`	FFTFunctions.`computeFFT(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBoundsFactory, int[] imageOffset, int[] imageSize, int numThreads, boolean scale)` Deprecated.
`void`	FourierTransform.`setCustomOutOfBoundsStrategy(OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.

Constructors in net.imglib2.algorithm.fft with parameters of type OutOfBoundsFactory
Constructor and Description
`FourierTransform(Img<T> input, S complexType, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.

Uses of OutOfBoundsFactory in net.imglib2.algorithm.fft2

Methods in net.imglib2.algorithm.fft2 with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`static <R extends RealType<R>> Img<ComplexFloatType>`	FFT.`realToComplex(RandomAccessibleInterval<R> input, OutOfBoundsFactory<R,RandomAccessibleInterval<R>> oobs, ImgFactory<ComplexFloatType> factory)`
`static <R extends RealType<R>> Img<ComplexFloatType>`	FFT.`realToComplex(RandomAccessibleInterval<R> input, OutOfBoundsFactory<R,RandomAccessibleInterval<R>> oobs, ImgFactory<ComplexFloatType> factory, ExecutorService service)`
`static <R extends RealType<R>> Img<ComplexFloatType>`	FFT.`realToComplex(RandomAccessibleInterval<R> input, OutOfBoundsFactory<R,RandomAccessibleInterval<R>> oobs, ImgFactory<ComplexFloatType> factory, int numThreads)`

Uses of OutOfBoundsFactory in net.imglib2.algorithm.gauss

Methods in net.imglib2.algorithm.gauss with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`static Img<DoubleType>`	GaussDouble.`gauss(double[] sigma, Img<DoubleType> input, OutOfBoundsFactory<DoubleType,Img<DoubleType>> outOfBounds)` Deprecated.
`static Img<FloatType>`	GaussFloat.`gauss(double[] sigma, Img<FloatType> input, OutOfBoundsFactory<FloatType,Img<FloatType>> outOfBounds)` Deprecated.
`static <T extends RealType<T>> Img<T>`	Gauss.`inDouble(double[] sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution with double precision on an entire `Img`
`static <T extends RealType<T>> Img<T>`	Gauss.`inDouble(double sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution with double precision on an entire `Img`
`static <T extends RealType<T>> void`	Gauss.`inDoubleInPlace(double[] sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire `Img`
`static <T extends RealType<T>> void`	Gauss.`inDoubleInPlace(double sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire `Img`
`static <T extends RealType<T>> Img<T>`	Gauss.`inFloat(double[] sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution with float precision on an entire `Img`
`static <T extends RealType<T>> Img<T>`	Gauss.`inFloat(double sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution with float precision on an entire `Img`
`static <T extends RealType<T>> void`	Gauss.`inFloatInPlace(double[] sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire `Img`
`static <T extends RealType<T>> void`	Gauss.`inFloatInPlace(double sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire `Img`
`static <T extends NumericType<T>> Img<T>`	Gauss.`inNumericType(double[] sigma, Img<T> img, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outofbounds)` Deprecated. Computes a Gaussian convolution with the precision of the type provided on an entire `Img`
`static <T extends NumericType<T>> Img<T>`	Gauss.`inNumericType(double sigma, Img<T> img, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outofbounds)` Deprecated. Computes a Gaussian convolution with the precision of the type provided on an entire `Img`
`static <T extends NumericType<T>> void`	Gauss.`inNumericTypeInPlace(double[] sigma, Img<T> img, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire `Img`
`static <T extends NumericType<T>> void`	Gauss.`inNumericTypeInPlace(double sigma, Img<T> img, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outofbounds)` Deprecated. Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire `Img`
`static <T extends RealType<T>> Img<DoubleType>`	Gauss.`toDouble(double[] sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution with double precision on an entire `Img`
`static <T extends RealType<T>> Img<DoubleType>`	Gauss.`toDouble(double sigma, Img<T> img, OutOfBoundsFactory<DoubleType,RandomAccessibleInterval<DoubleType>> outofbounds)` Deprecated. Computes a Gaussian convolution with double precision on an entire `Img`
`static <T extends RealType<T>> Img<FloatType>`	Gauss.`toFloat(double[] sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution with float precision on an entire `Img`
`static <T extends RealType<T>> Img<FloatType>`	Gauss.`toFloat(double sigma, Img<T> img, OutOfBoundsFactory<FloatType,RandomAccessibleInterval<FloatType>> outofbounds)` Deprecated. Computes a Gaussian convolution with float precision on an entire `Img`

Constructors in net.imglib2.algorithm.gauss with parameters of type OutOfBoundsFactory
Constructor and Description
`GaussDouble(double[] sigma, Img<DoubleType> input, OutOfBoundsFactory<DoubleType,Img<DoubleType>> outOfBounds)` Deprecated. Computes a Gaussian convolution with double precision on an entire `Img`
`GaussFloat(double[] sigma, Img<FloatType> input, OutOfBoundsFactory<FloatType,Img<FloatType>> outOfBounds)` Deprecated. Computes a Gaussian convolution with float precision on an entire `Img`
`GaussGeneral(double[] sigma, Img<T> input, OutOfBoundsFactory<T,Img<T>> outOfBounds)` Deprecated. Computes a Gaussian convolution with any precision on an entire `Img` using the `OutOfBoundsMirrorFactory` with single boundary WARNING: This is a very slow implementation as it is not written for `NativeType`.
`GaussNativeType(double[] sigma, Img<T> input, OutOfBoundsFactory<T,Img<T>> outOfBounds)` Deprecated. Computes a Gaussian convolution with any precision on an entire `Img` using the `OutOfBoundsMirrorFactory` with single boundary

Uses of OutOfBoundsFactory in net.imglib2.algorithm.gradient

Methods in net.imglib2.algorithm.gradient with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`static <T extends RealType<T>> RandomAccessibleInterval<T>`	HessianMatrix.`calculateMatrix(RandomAccessible<T> source, RandomAccessibleInterval<T> gradient, RandomAccessibleInterval<T> hessianMatrix, OutOfBoundsFactory<T,? super RandomAccessibleInterval<T>> outOfBounds)`
`static <T extends RealType<T>> RandomAccessibleInterval<T>`	HessianMatrix.`calculateMatrix(RandomAccessible<T> source, RandomAccessibleInterval<T> gradient, RandomAccessibleInterval<T> hessianMatrix, OutOfBoundsFactory<T,? super RandomAccessibleInterval<T>> outOfBounds, int nTasks, ExecutorService es)`
`static <T extends RealType<T>,U extends RealType<U>> RandomAccessibleInterval<U>`	HessianMatrix.`calculateMatrix(RandomAccessible<T> source, RandomAccessibleInterval<U> gaussian, RandomAccessibleInterval<U> gradient, RandomAccessibleInterval<U> hessianMatrix, OutOfBoundsFactory<U,? super RandomAccessibleInterval<U>> outOfBounds, double... sigma)`
`static <T extends RealType<T>,U extends RealType<U>> RandomAccessibleInterval<U>`	HessianMatrix.`calculateMatrix(RandomAccessible<T> source, RandomAccessibleInterval<U> gaussian, RandomAccessibleInterval<U> gradient, RandomAccessibleInterval<U> hessianMatrix, OutOfBoundsFactory<U,? super RandomAccessibleInterval<U>> outOfBounds, int nTasks, ExecutorService es, double... sigma)`

Uses of OutOfBoundsFactory in net.imglib2.algorithm.interpolation.randomaccess

Fields in net.imglib2.algorithm.interpolation.randomaccess declared as OutOfBoundsFactory
Modifier and Type	Field and Description
`protected OutOfBoundsFactory<?,?>`	BSplineCoefficientsInterpolatorFactory.`oobFactory`

Constructors in net.imglib2.algorithm.interpolation.randomaccess with parameters of type OutOfBoundsFactory
Constructor and Description
`BSplineCoefficientsInterpolatorFactory(RandomAccessible<T> img, Interval interval, int order, boolean clipping, ImgFactory<S> coefficientFactory, OutOfBoundsFactory<? extends RealType<?>,?> oobFactory)` Creates a new `BSplineCoefficientsInterpolatorFactory` using the BSpline interpolation in a certain window
`BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<S> coefficients, int order, boolean clipping, OutOfBoundsFactory<? extends RealType<?>,?> oobFactory)`

Uses of OutOfBoundsFactory in net.imglib2.algorithm.region.localneighborhood

Fields in net.imglib2.algorithm.region.localneighborhood declared as OutOfBoundsFactory
Modifier and Type	Field and Description
`protected OutOfBoundsFactory<T,RandomAccessibleInterval<T>>`	AbstractNeighborhood.`outOfBounds`

Constructors in net.imglib2.algorithm.region.localneighborhood with parameters of type OutOfBoundsFactory
Constructor and Description
`AbstractNeighborhood(int numDims, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)`
`BufferedRectangularNeighborhood(int numDims, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds, long[] spans)`
`BufferedRectangularNeighborhood(RandomAccessibleInterval<T> source, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds, long[] spans)`
`EllipseNeighborhood(RandomAccessibleInterval<T> source, long[] center, long[] radiuses, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)`
`EllipsoidNeighborhood(RandomAccessibleInterval<T> source, long[] center, long[] radiuses, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)`
`HyperSphereNeighborhoodGPL(int numDims, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds, long radius)` Deprecated.
`HyperSphereNeighborhoodGPL(RandomAccessibleInterval<T> source, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds, long radius)` Deprecated.
`RectangleNeighborhoodGPL(int numDims, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Instantiate a new rectangular neighborhood, on the given image, with the given factory to return out of bounds values.
`RectangleNeighborhoodGPL(RandomAccessibleInterval<T> source, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Instantiate a new rectangular neighborhood, on the given image, with the given factory to return out of bounds values.

Uses of OutOfBoundsFactory in net.imglib2.labeling

Classes in net.imglib2.labeling that implement OutOfBoundsFactory
Modifier and Type	Class and Description
`class`	`LabelingOutOfBoundsRandomAccessFactory<T extends Comparable<T>,F extends Labeling<T>>` Deprecated.

Uses of OutOfBoundsFactory in net.imglib2.outofbounds

Classes in net.imglib2.outofbounds that implement OutOfBoundsFactory
Modifier and Type	Class and Description
`class`	`OutOfBoundsBorderFactory<T,F extends Interval & RandomAccessible<T>>` Strategy to repeat the boundary pixels (creates `OutOfBoundsBorder`).
`class`	`OutOfBoundsConstantValueFactory<T,F extends Interval & RandomAccessible<T>>`
`class`	`OutOfBoundsMirrorExpWindowingFactory<T extends NumericType<T>,F extends Interval & RandomAccessible<T>>` TODO
`class`	`OutOfBoundsMirrorFactory<T,F extends Interval & RandomAccessible<T>>` Create appropriate strategies that virtually mirror a `RandomAccessible` at its boundaries.
`class`	`OutOfBoundsPeriodicFactory<T,F extends Interval & RandomAccessible<T>>` Create appropriate strategies that virtually extend a `RandomAccessibleInterval` periodically.
`class`	`OutOfBoundsRandomValueFactory<T extends RealType<T>,F extends Interval & RandomAccessible<T>>`

Uses of OutOfBoundsFactory in net.imglib2.realtransform

Methods in net.imglib2.realtransform with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`protected static <T extends RealType<T>> RealRandomAccessible<T>[]`	PositionFieldTransform.`extendAndInterpolate(RandomAccessibleInterval<T>[] positions, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBoundsFactory, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory)`

Constructors in net.imglib2.realtransform with parameters of type OutOfBoundsFactory
Constructor and Description
`DeformationFieldTransform(OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBoundsFactory, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, RandomAccessibleInterval<T>... positions)`
`PositionFieldTransform(OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBoundsFactory, InterpolatorFactory<T,RandomAccessible<T>> interpolatorFactory, RandomAccessibleInterval<T>... positions)`

Uses of OutOfBoundsFactory in net.imglib2.view

Fields in net.imglib2.view declared as OutOfBoundsFactory
Modifier and Type	Field and Description
`protected OutOfBoundsFactory<T,? super F>`	ExtendedRandomAccessibleInterval.`factory`

Methods in net.imglib2.view that return OutOfBoundsFactory
Modifier and Type	Method and Description
`OutOfBoundsFactory<T,? super F>`	ExtendedRandomAccessibleInterval.`getOutOfBoundsFactory()`

Methods in net.imglib2.view with parameters of type OutOfBoundsFactory
Modifier and Type	Method and Description
`static <T,F extends RandomAccessibleInterval<T>> IntervalView<T>`	Views.`expand(F source, OutOfBoundsFactory<T,? super F> oob, long... border)` Expand a RandomAccessibleInterval as specified by border.
`static <T,F extends RandomAccessibleInterval<T>> ExtendedRandomAccessibleInterval<T,F>`	Views.`extend(F source, OutOfBoundsFactory<T,? super F> factory)` Extend a RandomAccessibleInterval with an out-of-bounds strategy.

Constructors in net.imglib2.view with parameters of type OutOfBoundsFactory
Constructor and Description
`ExtendedRandomAccessibleInterval(F source, OutOfBoundsFactory<T,? super F> factory)`

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