Uses of Interface net.imagej.overlay.Overlay (ImageJ2 Javadocs 0-SNAPSHOT API)

Packages that use Overlay
Package	Description
net.imagej.display
net.imagej.display.process
net.imagej.event
net.imagej.legacy.translate
net.imagej.overlay
net.imagej.plugins.commands.assign
net.imagej.plugins.commands.overlay
net.imagej.ui.swing.overlay

Uses of Overlay in net.imagej.display

Methods in net.imagej.display that return Overlay
Modifier and Type	Method and Description
`Overlay`	OverlayService.`getActiveOverlay(ImageDisplay disp)` Returns the active overlay associated with a display
`Overlay`	DefaultOverlayService.`getActiveOverlay(ImageDisplay disp)`
`Overlay`	OverlayView.`getData()`
`Overlay`	DefaultOverlayView.`getData()`
`Overlay`	OverlayInfo.`getOverlay()`

Methods in net.imagej.display that return types with arguments of type Overlay
Modifier and Type	Method and Description
`List<Overlay>`	OverlayService.`getOverlays()` Gets a list of all `Overlay`s.
`List<Overlay>`	DefaultOverlayService.`getOverlays()`
`List<Overlay>`	OverlayService.`getOverlays(ImageDisplay display)` Gets a list of `Overlay`s linked to the given `ImageDisplay`.
`List<Overlay>`	DefaultOverlayService.`getOverlays(ImageDisplay display)`
`List<Overlay>`	OverlayService.`getOverlays(ImageDisplay display, boolean selectedOnly)` Gets a list of `Overlay`s linked to the given `ImageDisplay`.
`List<Overlay>`	DefaultOverlayService.`getOverlays(ImageDisplay display, boolean selectedOnly)`
`List<Overlay>`	OverlayInfoList.`selectedOverlays()`

Methods in net.imagej.display with parameters of type Overlay
Modifier and Type	Method and Description
`boolean`	OverlayInfoList.`addOverlay(int i, Overlay overlay)`
`boolean`	OverlayInfoList.`addOverlay(Overlay overlay)`
`boolean`	OverlayInfoList.`deleteOverlay(Overlay overlay)`
`void`	OverlayService.`drawOverlay(Overlay o, Dataset ds, Position position, ChannelCollection channelData)` Draws the outline of a given overlay in a dataset using the set of channel information provided.
`void`	DefaultOverlayService.`drawOverlay(Overlay o, Dataset ds, Position position, ChannelCollection channels)`
`void`	OverlayService.`drawOverlay(Overlay o, ImageDisplay display, ChannelCollection channelData)` Draws the outline of a given overlay in a display using the set of channel information provided.
`void`	DefaultOverlayService.`drawOverlay(Overlay o, ImageDisplay display, ChannelCollection channels)`
`void`	OverlayService.`fillOverlay(Overlay o, Dataset ds, Position position, ChannelCollection channelData)` Draws and fills the outline of a given overlay in a dataset using the set of channel information provided.
`void`	DefaultOverlayService.`fillOverlay(Overlay o, Dataset ds, Position position, ChannelCollection channels)`
`void`	OverlayService.`fillOverlay(Overlay o, ImageDisplay display, ChannelCollection channelData)` Draws and fills the outline of a given overlay in a display using the set of channel information provided.
`void`	DefaultOverlayService.`fillOverlay(Overlay o, ImageDisplay display, ChannelCollection channels)`
`int`	OverlayInfoList.`findIndex(Overlay overlay)`
`List<ImageDisplay>`	OverlayService.`getDisplays(Overlay o)` Returns all the displays associated with an overlay
`List<ImageDisplay>`	DefaultOverlayService.`getDisplays(Overlay o)`
`ImageDisplay`	OverlayService.`getFirstDisplay(Overlay o)` Returns the first display associated with an overlay
`ImageDisplay`	DefaultOverlayService.`getFirstDisplay(Overlay o)`
`void`	OverlayService.`removeOverlay(ImageDisplay display, Overlay overlay)` Removes an `Overlay` from the given `ImageDisplay`.
`void`	DefaultOverlayService.`removeOverlay(ImageDisplay display, Overlay overlay)`
`void`	OverlayService.`removeOverlay(Overlay overlay)` Removes an `Overlay` from all `ImageDisplay`s.
`void`	DefaultOverlayService.`removeOverlay(Overlay overlay)`
`boolean`	OverlayInfoList.`replaceOverlay(int i, Overlay overlay)`

Method parameters in net.imagej.display with type arguments of type Overlay
Modifier and Type	Method and Description
`void`	OverlayService.`addOverlays(ImageDisplay display, List<? extends Overlay> overlays)` Adds the list of `Overlay`s to the given `ImageDisplay`.
`void`	DefaultOverlayService.`addOverlays(ImageDisplay display, List<? extends Overlay> overlays)`

Constructors in net.imagej.display with parameters of type Overlay
Constructor and Description
`OverlayInfo(Overlay o)`
`OverlayInfo(Overlay overlay, boolean selected)`

Uses of Overlay in net.imagej.display.process

Methods in net.imagej.display.process that return Overlay
Modifier and Type	Method and Description
`Overlay`	ActiveOverlayPreprocessor.`getValue()`

Uses of Overlay in net.imagej.event

Methods in net.imagej.event that return Overlay
Modifier and Type	Method and Description
`Overlay`	OverlayUpdatedEvent.`getObject()`
`Overlay`	OverlayRestructuredEvent.`getObject()`
`Overlay`	OverlayDeletedEvent.`getObject()`
`Overlay`	OverlayCreatedEvent.`getObject()`

Constructors in net.imagej.event with parameters of type Overlay
Constructor and Description
`OverlayCreatedEvent(Overlay overlay)`
`OverlayDeletedEvent(Overlay overlay)`
`OverlayRestructuredEvent(Overlay overlay)`
`OverlayUpdatedEvent(Overlay overlay)`

Uses of Overlay in net.imagej.legacy.translate

Methods in net.imagej.legacy.translate that return types with arguments of type Overlay
Modifier and Type	Method and Description
`List<Overlay>`	OverlayHarmonizer.`getOverlays(ij.ImagePlus imp)` Deprecated. Extracts a list of `Overlay`s from the given `ImagePlus`.

Methods in net.imagej.legacy.translate with parameters of type Overlay
Modifier and Type	Method and Description
`void`	OverlayHarmonizer.`setOverlays(List<Overlay> overlays, Overlay activeOverlay, ij.ImagePlus imp)` Deprecated. Assigns a list of `Overlay`s to the given `ImagePlus`.

Method parameters in net.imagej.legacy.translate with type arguments of type Overlay
Modifier and Type	Method and Description
`void`	OverlayHarmonizer.`setOverlays(List<Overlay> overlays, Overlay activeOverlay, ij.ImagePlus imp)` Deprecated. Assigns a list of `Overlay`s to the given `ImagePlus`.

Uses of Overlay in net.imagej.overlay

Classes in net.imagej.overlay that implement Overlay
Modifier and Type	Class and Description
`class`	`AbstractOverlay` Abstract superclass of `Overlay` implementations.
`class`	`AbstractROIOverlay<R extends RegionOfInterest>` An overlay that has an associated region of interest
`class`	`AngleOverlay` Represents an angle having a center point and two end points.
`class`	`BinaryMaskOverlay<U extends BitType,V extends Img<U>>` TODO
`class`	`CompositeOverlay` A composite of one or more overlays.
`class`	`EllipseOverlay` An ellipse bounded by an axis-aligned rectangle, backed by an `EllipseRegionOfInterest`.
`class`	`GeneralPathOverlay` An overlay for the `GeneralPathRegionOfInterest`.
`class`	`LineOverlay` Represents a line going from here to there, possibly with arrows on one end, the other or both.
`class`	`PointOverlay` Represents a user specified collection of points
`class`	`PolygonOverlay` TODO
`class`	`RectangleOverlay` An axis-aligned rectangle, backed by a `RectangleRegionOfInterest`.
`class`	`TextOverlay` Represents an `Overlay` that contains a string of text.

Methods in net.imagej.overlay that return Overlay
Modifier and Type	Method and Description
`Overlay`	Overlay.`duplicate()`
`Overlay`	BinaryMaskOverlay.`duplicate()`
`Overlay`	AbstractOverlay.`duplicate()`

Methods in net.imagej.overlay that return types with arguments of type Overlay
Modifier and Type	Method and Description
`List<Overlay>`	CompositeOverlay.`getSubcomponents()`

Methods in net.imagej.overlay with parameters of type Overlay
Modifier and Type	Method and Description
`void`	CompositeOverlay.`and(Overlay o)`
`void`	CompositeOverlay.`doOperation(CompositeOverlay.Operation op, Overlay o)`
`void`	CompositeOverlay.`not(Overlay o)`
`void`	CompositeOverlay.`or(Overlay o)`
`void`	CompositeOverlay.`remove(Overlay o)`
`void`	CompositeOverlay.`startWith(Overlay o)`
`void`	CompositeOverlay.`xor(Overlay o)`

Uses of Overlay in net.imagej.plugins.commands.assign

Methods in net.imagej.plugins.commands.assign that return Overlay
Modifier and Type	Method and Description
`Overlay`	FillDataValues.`getOverlay()`

Methods in net.imagej.plugins.commands.assign with parameters of type Overlay
Modifier and Type	Method and Description
`void`	FillDataValues.`setOverlay(Overlay overlay)`

Constructors in net.imagej.plugins.commands.assign with parameters of type Overlay
Constructor and Description
`InplaceUnaryTransform(net.imglib2.ops.operation.complex.unary.ComplexUnaryOperation<O,O> operation, O outType, Dataset dataset, Overlay overlay)` All planes version
`InplaceUnaryTransform(net.imglib2.ops.operation.complex.unary.ComplexUnaryOperation<O,O> operation, O outType, Dataset dataset, Overlay overlay, Position planePos)` Single plane versions
`NoiseAdder(Dataset dataset, Overlay overlay, Position pos)` Constructor - takes an input Dataset as the baseline data to compute perturbed values from.

Uses of Overlay in net.imagej.plugins.commands.overlay

Methods in net.imagej.plugins.commands.overlay that return Overlay
Modifier and Type	Method and Description
`Overlay`	ConvertToMask.`getOutput()`

Method parameters in net.imagej.plugins.commands.overlay with type arguments of type Overlay
Modifier and Type	Method and Description
`protected void`	AbstractOverlayProperties.`setOverlays(List<Overlay> overlays)`

Uses of Overlay in net.imagej.ui.swing.overlay

Classes in net.imagej.ui.swing.overlay with type parameters of type Overlay
Modifier and Type	Class and Description
`class`	`AbstractJHotDrawAdapter<O extends Overlay,F extends Figure>` An abstract class that gives default behavior for the `JHotDrawAdapter` interface.

Methods in net.imagej.ui.swing.overlay that return Overlay
Modifier and Type	Method and Description
`Overlay`	ThresholdJHotDrawAdapter.`createNewOverlay()`
`Overlay`	RectangleJHotDrawAdapter.`createNewOverlay()`
`Overlay`	PolylineJHotDrawAdapter.`createNewOverlay()`
`Overlay`	PolygonJHotDrawAdapter.`createNewOverlay()`
`Overlay`	JHotDrawAdapter.`createNewOverlay()` Creates a new overlay.
`Overlay`	GeneralPathJHotDrawAdapter.`createNewOverlay()`
`Overlay`	EllipseJHotDrawAdapter.`createNewOverlay()`
`Overlay`	DefaultJHotDrawAdapter.`createNewOverlay()`

Methods in net.imagej.ui.swing.overlay with parameters of type Overlay
Modifier and Type	Method and Description
`protected static RectangleOverlay`	RectangleJHotDrawAdapter.`downcastOverlay(Overlay roi)`
`protected static EllipseOverlay`	EllipseJHotDrawAdapter.`downcastOverlay(Overlay roi)`
`JHotDrawAdapter<?>`	JHotDrawService.`getAdapter(Overlay overlay)` Gets the first available adapter for the given overlay.
`JHotDrawAdapter<?>`	JHotDrawService.`getAdapter(Overlay overlay, Figure figure)` Gets the first available adapter for the given overlay.
`ArrayList<JHotDrawAdapter<?>>`	JHotDrawService.`getAdapters(Overlay overlay)` Gets all adapters capable of handling a given overlay.
`ArrayList<JHotDrawAdapter<?>>`	JHotDrawService.`getAdapters(Overlay overlay, Figure figure)` Gets all adapters capable of handling a given overlay/figure combination.
`boolean`	ThresholdJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	RectangleJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	PolylineJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	PolygonJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	PointJHotDrawOverlay.`supports(Overlay overlay, Figure figure)`
`boolean`	LineJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	JHotDrawAdapter.`supports(Overlay overlay, Figure figure)` Determines whether the adapter can handle a particular overlay, or overlay / figure combination.
`boolean`	GeneralPathJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	EllipseJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	DefaultJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`
`boolean`	AngleJHotDrawAdapter.`supports(Overlay overlay, Figure figure)`

Uses of Interfacenet.imagej.overlay.Overlay

Uses of Overlay in net.imagej.display

Uses of Overlay in net.imagej.display.process

Uses of Overlay in net.imagej.event

Uses of Overlay in net.imagej.legacy.translate

Uses of Overlay in net.imagej.overlay

Uses of Overlay in net.imagej.plugins.commands.assign

Uses of Overlay in net.imagej.plugins.commands.overlay

Uses of Overlay in net.imagej.ui.swing.overlay

Uses of Interface
net.imagej.overlay.Overlay